Self-trapped bidirectional waveguides in a saturable photorefractive medium

We introduce a time-dependent model for the generation of joint solitary waveguides by counter-propagating light beams in a photorefractive crystal. Depending on initial conditions, beams form stable steady-state structures or display periodic and irregular temporal dynamics. The steady-state solutions are non-uniform in the direction of propagation and represent a general class of self-trapped waveguides, including counterpropagating spatial vector solitons as a particular case.Comment: 4 pages, 5 figure

Complex Evolutionary History of the Aeromonas veronii Group Revealed by Host Interaction and DNA Sequence Data

Aeromonas veronii biovar sobria, Aeromonas veronii biovar veronii, and Aeromonas allosaccharophila are a closely related group of organisms, the Aeromonas veronii Group, that inhabit a wide range of host animals as a symbiont or pathogen. In this study, the ability of various strains to colonize the medicinal leech as a model for beneficial symbiosis and to kill wax worm larvae as a model for virulence was determined. Isolates cultured from the leech out-competed other strains in the leech model, while most strains were virulent in the wax worms. Three housekeeping genes, recA, dnaJ and gyrB, the gene encoding chitinase, chiA, and four loci associated with the type three secretion system, ascV, ascFG, aexT, and aexU were sequenced. The phylogenetic reconstruction failed to produce one consensus tree that was compatible with most of the individual genes. The Approximately Unbiased test and the Genetic Algorithm for Recombination Detection both provided further support for differing evolutionary histories among this group of genes. Two contrasting tests detected recombination within aexU, ascFG, ascV, dnaJ, and gyrB but not in aexT or chiA. Quartet decomposition analysis indicated a complex recent evolutionary history for these strains with a high frequency of horizontal gene transfer between several but not among all strains. In this study we demonstrate that at least for some strains, horizontal gene transfer occurs at a sufficient frequency to blur the signal from vertically inherited genes, despite strains being adapted to distinct niches. Simply increasing the number of genes included in the analysis is unlikely to overcome this challenge in organisms that occupy multiple niches and can exchange DNA between strains specialized to different niches. Instead, the detection of genes critical in the adaptation to specific niches may help to reveal the physiological specialization of these strains

Transverse pattern formation and its control in photorefractive optics

A wealth of periodic transverse patterns is observed in nonlinear optical, photorefractive single-feedback systems. It is the extension of a photorefractive medium in the direction of propagation of the laser beam that allows for the formation of stable hexagons, squares, rhombuses and dodecagons above the first bifurcation of the system. In this article we review the formation of these periodic patterns and present linear and nonlinear stability analyses that predict the type of pattern to appear. Amplitude equations for the interactions of unstable sidebands are introduced. We compare numerical and experimental results on two-dimensional transverse pattern formation. We present control methods for the invasive and non-invasive manipulation of different pattern states using a Fourier filtering technique. © 2004 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.SCOPUS: re.jFLWINinfo:eu-repo/semantics/publishe

Transverse modulational instabilities of counterpropagating solitons in photorefractive crystals

We study numerically the counterpropagating vector solitons in SBN:60 photorefractive crystals. A simple theory is provided for explaining the symmetry-breaking transverse instability of these solitons. Phase diagram is produced that depicts the transition from stable counterpropagating solitons to bidirectional waveguides to unstable optical structures. Numerical simulations are performed that predict novel dynamical beam structures, such as the standing-wave and rotating multipole vector solitonic clusters. For larger coupling strengths and/or thicker crystals the beams form unstable self-trapped optical structures that have no counterparts in the copropagating geometry.Journal Articleinfo:eu-repo/semantics/publishe