Game of Tones: Faculty detection of GPT-4 generated content in university assessments

This study explores the robustness of university assessments against the use of Open AI's Generative Pre-Trained Transformer 4 (GPT-4) generated content and evaluates the ability of academic staff to detect its use when supported by the Turnitin Artificial Intelligence (AI) detection tool. The research involved twenty-two GPT-4 generated submissions being created and included in the assessment process to be marked by fifteen different faculty members. The study reveals that although the detection tool identified 91% of the experimental submissions as containing some AI-generated content, the total detected content was only 54.8%. This suggests that the use of adversarial techniques regarding prompt engineering is an effective method in evading AI detection tools and highlights that improvements to AI detection software are needed. Using the Turnitin AI detect tool, faculty reported 54.5% of the experimental submissions to the academic misconduct process, suggesting the need for increased awareness and training into these tools. Genuine submissions received a mean score of 54.4, whereas AI-generated content scored 52.3, indicating the comparable performance of GPT-4 in real-life situations. Recommendations include adjusting assessment strategies to make them more resistant to the use of AI tools, using AI-inclusive assessment where possible, and providing comprehensive training programs for faculty and students. This research contributes to understanding the relationship between AI-generated content and academic assessment, urging further investigation to preserve academic integrity

CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms

Our goal is to introduce and describe the utility of a new pipeline “Contigs Assembly Pipeline using Reference Genome” (CAPRG), which has been developed to assemble “long sequence reads” for non-model organisms by leveraging a reference genome of a closely related phylogenetic relative. To facilitate this effort, we utilized two avian transcriptomic datasets generated using ROCHE/454 technology as test cases for CAPRG assembly. We compared the results of CAPRG assembly using a reference genome with the results of existing methods that utilize de novo strategies such as VELVET, PAVE, and MIRA by employing parameter space comparisons (intra-assembling comparison). CAPRG performed as well or better than the existing assembly methods based on various benchmarks for “gene-hunting.” Further, CAPRG completed the assemblies in a fraction of the time required by the existing assembly algorithms. Additional advantages of CAPRG included reduced contig inflation resulting in lower computational resources for annotation, and functional identification for contigs that may be categorized as “unknowns” by de novo methods. In addition to providing evaluation of CAPRG performance, we observed that the different assembly (inter-assembly) results could be integrated to enhance the putative gene coverage for any transcriptomics study

Concert recording 2018-04-19b

[Track 1]. Sonatina meridional / Manuel Ponce -- [Track 2]. Etude no. 6 / Hector Villa-Lobos -- [Track 3]. Milonga / Jorge Cardoso -- [Track 4]. Straight no chaser / T. Monk -- [Track 5]. A child is born / T. Monk -- [Track 6]. Autumn leaves / J. Kosma -- [Track 7]. Body and soul / J. Green -- [Track 8]. All the things you are / J. Kern -- [Track 9]. 4 on 6 / Wes Montgomery -- [Track 10]. Bright size life / P. Metheny -- [Track 11]. Dueling banjos / Arthur Smith -- [Track 12]. Elenor Rigby / Lennon and McCartney -- [Track 13]. Alone / Bryce Holcomb -- [Track 14]. All around me / Flyleaf -- Vital transformation / Mahavisunu Orchestra

An individualized approach to sustained inflation duration at birth improves outcomes in newborn preterm lambs

A sustained first inflation (SI) at birth may aid lung liquid clearance and aeration, but the impact of SI duration relative to the volume-response of the lung is poorly understood. We compared three SI strategies: 1) variable duration defined by attaining volume equilibrium using real-time electrical impedance tomography (EIT; SIplat); 2) 30 s beyond equilibrium (SIlong); 3) short 30-s SI (SI30); and 4) positive pressure ventilation without SI (no-SI) on spatiotemporal aeration and ventilation (EIT), gas exchange, lung mechanics, and regional early markers of injury in preterm lambs. Fifty-nine fetal-instrumented lambs were ventilated for 60 min after applying the allocated first inflation strategy. At study completion molecular and histological markers of lung injury were analyzed. The time to SI volume equilibrium, and resultant volume, were highly variable; mean (SD) 55 (34) s, coefficient of variability 59%. SIplat and SIlong resulted in better lung mechanics, gas exchange and lower ventilator settings than both no-SI and SI30. At 60 min, alveolar-arterial difference in oxygen was a mean (95% confidence interval) 130 (13, 249) higher in SI30 vs. SIlong group (two-way ANOVA). These differences were due to better spatiotemporal aeration and tidal ventilation, although all groups showed redistribution of aeration towards the nondependent lung by 60 min. Histological lung injury scores mirrored spatiotemporal change in aeration and were greatest in SI30 group (P < 0.01, Kruskal-Wallis test). An individualized volume-response approach to SI was effective in optimizing aeration, homogeneous tidal ventilation, and respiratory outcomes, while an inadequate SI duration had no benefit over positive pressure ventilation alone

Concert recording 2017-12-05a

[Track 1]. Lou Brouwer medley / Brouwer -- [Track 2]. One summer\u27s day / Daniel Asbun -- [Track 3]. What a friend we have in Jesus / Brad Paisley -- [Track 4]. Unity village / Pat Metheny -- [Track 5] Truth? / Asher Perkins -- [Track 6]. Invention no. 13 / J.S. Bach -- [Track 7]. Black Orpheus / Stan Getz arranged Luiz Bonfa -- [Track 8]. Five Hawaiian minutes / Shiro Mori -- [Track 9]. Birks works / Dizzy Gillespie -- [Track 10]. Perhaps / Charlie Parker -- [Track 11]. The river / King Gizzard and the Lizard Wizard -- [Track 12]. Minor swing / Django Reinhardt and Stephan Grappelli -- [Track 13]. Why break mine / Legally blind -- [Track 14]. Monochrome / Carlie Spiers -- [Track 15]. Stuck in voodoo / Dawson Scantling -- [Track 16]. I\u27m saved / Shelby Sprott -- [Track 17]. Newborn / Muse -- [Track 18]. Blueberry brain / Elephantom

Lack of population genetic structure and host specificity in the bat fly, Cyclopodia horsfieldi, across species of Pteropus bats in Southeast Asia

Background: Population-level studies of parasites have the potential to elucidate patterns of host movement and cross-species interactions that are not evident from host genealogy alone. Bat flies are obligate and generally host-specific blood-feeding parasites of bats. Old-World flies in the family Nycteribiidae are entirely wingless and depend on their hosts for long-distance dispersal; their population genetics has been unstudied to date. Methods: We collected a total of 125 bat flies from three Pteropus species (Pteropus vampyrus, P. hypomelanus, and P. lylei) from eight localities in Malaysia, Cambodia, and Vietnam. We identified specimens morphologically and then sequenced three mitochondrial DNA gene fragments (CoI, CoII, cytB; 1744 basepairs total) from a subset of 45 bat flies. We measured genetic diversity, molecular variance, and population genetic subdivision (FST), and used phylogenetic and haplotype network analyses to quantify parasite genetic structure across host species and localities. Results: All flies were identified as Cyclopodia horsfieldi with the exception of two individuals of Eucampsipoda sundaica. Low levels of population genetic structure were detected between populations of Cyclopodia horsfieldi from across a wide geographic range (~1000 km), and tests for isolation by distance were rejected. AMOVA results support a lack of geographic and host-specific population structure, with molecular variance primarily partitioned within populations. Pairwise FST values from flies collected from island populations of Pteropus hypomelanus in East and West Peninsular Malaysia supported predictions based on previous studies of host genetic structure. Conclusions: The lack of population genetic structure and morphological variation observed in Cyclopodia horsfieldi is most likely due to frequent contact between flying fox species and subsequent high levels of parasite gene flow. Specifically, we suggest that Pteropus vampyrus may facilitate movement of bat flies between the three Pteropus species in the region. We demonstrate the utility of parasite genetics as an additional layer of information to measure host movement and interspecific host contact. These approaches may have wide implications for understanding zoonotic, epizootic, and enzootic disease dynamics. Bat flies may play a role as vectors of disease in bats, and their competence as vectors of bacterial and/or viral pathogens is in need of further investigation

Multiple Environmental Stressors Induce Complex Transcriptomic Responses Indicative of Phenotypic Outcomes in Western Fence Lizard

Background The health and resilience of species in natural environments is increasingly challenged by complex anthropogenic stressor combinations including climate change, habitat encroachment, and chemical contamination. To better understand impacts of these stressors we examined the individual- and combined-stressor impacts of malaria infection, food limitation, and 2,4,6-trinitrotoluene (TNT) exposures on gene expression in livers of Western fence lizards (WFL, Sceloporus occidentalis) using custom WFL transcriptome-based microarrays. Results Computational analysis including annotation enrichment and correlation analysis identified putative functional mechanisms linking transcript expression and toxicological phenotypes. TNT exposure increased transcript expression for genes involved in erythropoiesis, potentially in response to TNT-induced anemia and/or methemoglobinemia and caused dose-specific effects on genes involved in lipid and overall energy metabolism consistent with a hormesis response of growth stimulation at low doses and adverse decreases in lizard growth at high doses. Functional enrichment results were indicative of inhibited potential for lipid mobilization and catabolism in TNT exposures which corresponded with increased inguinal fat weights and was suggestive of a decreased overall energy budget. Malaria infection elicited enriched expression of multiple immune-related functions likely corresponding to increased white blood cell (WBC) counts. Food limitation alone enriched functions related to cellular energy production and decreased expression of immune responses consistent with a decrease in WBC levels. Conclusions Despite these findings, the lizards demonstrated immune resilience to malaria infection under food limitation with transcriptional results indicating a fully competent immune response to malaria, even under bio-energetic constraints. Interestingly, both TNT and malaria individually increased transcriptional expression of immune-related genes and increased overall WBC concentrations in blood; responses that were retained in the TNT x malaria combined exposure. The results demonstrate complex and sometimes unexpected responses to multiple stressors where the lizards displayed remarkable resiliency to the stressor combinations investigated

Fixed-Duration versus EIT-determined Volume-Response Defined Sustained Inflation in Preterm Lambs

We compared a standard fixed duration Sustained Inflation (SI) during resuscitation at birth in preterm lambs with two SI guided by real-time volumetric EIT imaging, lasting respectively until volume plateau and until 30s beyond plateau. Global and local end expiratory volume (EEV), lung mechanics and gas exchange were measured. Both the volumetric EIT guided approaches were feasible and resulted in better relative lung aeration