Incidental Catch of Marine Mammals by Foreign and Joint Venture Trawl Vessels in the U.S. EEZ of the North Pacific, 1973-88

During 1973-88, 3,661 marine mammals of 17 species were reported as incidental catch by U.S. fishery observers aboard foreign and joint venture trawl vessels in the U.S. Exclusive Economic Zone in the North Pacific Ocean and the Bering Sea. Northern sea lions (Eumetopias jubatus) accounted for 90% of the reported incidental mortality in the Gulf of Alaska and eastern Bering Sea. Nearly half of these sea lions were taken in trawl nets in the Shelikof Strait, Alaska, joint venture fishery during 1982-84. However, high incidental mortality rates (>25 sea lions per 10,000 metric tons of groundfish catch) also occurred in the foreign fisheries near Kodiak Island and in the Aleutian Islands area in earlier years. Estimated annual mortality of incidentally caught northern sea lions in Alaska declined from 1,000 to 2,000 animals per year during the early 1970s and 1982 to fewer than 100 animals in 1988. In the Bering Sea most sea lions incidentally caught were males, while in the Gulf of Alaska females were more frequently caught. Females may also have been dominant in the incidental catch of sea lions in the Aleutian Islands area, but age and sex composition data are limited. Incidental mortality of adult female sea lions by foreign trawl fisheries in these areas could have partially contributed to the reported declines in northern sea lion populations in Alaska during the 1970s, but it cannot alone account for the present decline in population size. (PDF file contains 64 pages.

Grass-Fed Certification: The Case of the Uruguayan Beef Industry

International Relations/Trade, Livestock Production/Industries, Q13, Q17,

Accelerated Parallel Non-conjugate Sampling for Bayesian Non-parametric Models

Inference of latent feature models in the Bayesian nonparametric setting is generally difficult, especially in high dimensional settings, because it usually requires proposing features from some prior distribution. In special cases, where the integration is tractable, we could sample new feature assignments according to a predictive likelihood. However, this still may not be efficient in high dimensions. We present a novel method to accelerate the mixing of latent variable model inference by proposing feature locations from the data, as opposed to the prior. First, we introduce our accelerated feature proposal mechanism that we will show is a valid Bayesian inference algorithm and next we propose an approximate inference strategy to perform accelerated inference in parallel. This sampling method is efficient for proper mixing of the Markov chain Monte Carlo sampler, computationally attractive, and is theoretically guaranteed to converge to the posterior distribution as its limiting distribution.Comment: Previously known as "Accelerated Inference for Latent Variable Models

Gonadal hormones, but not sex, affect the acquisition and maintenance of a Go/No-Go odor discrimination task in mice

In mice, olfaction is crucial for identifying social odors (pheromones) that signal the presence of suitable mates. We used a custom-built olfactometer and a thirst-motivated olfactory discrimination Go/No-Go (GNG) task to ask whether discrimination of volatile odors is sexually dimorphic and modulated in mice by adult sex hormones. Males and females gonadectomized prior to training failed to learn even the initial phase of the task, which involved nose poking at a port in one location obtaining water at an adjacent port. Gonadally intact males and females readily learned to seek water when male urine (S+) was present but not when female urine (S−) was present; they also learned the task when non-social odorants (amyl acetate, S+; peppermint, S−) were used. When mice were gonadectomized after training the ability of both sexes to discriminate urinary as well as non-social odors was reduced; however, after receiving testosterone propionate (castrated males) or estradiol benzoate (ovariectomized females), task performance was restored to pre-gonadectomy levels. There were no overall sex differences in performance across gonadal conditions in tests with either set of odors; however, ovariectomized females performed more poorly than castrated males in tests with non-social odors. Our results show that circulating sex hormones enable mice of both sexes to learn a GNG task and that gonadectomy reduces, while hormone replacement restores, their ability to discriminate between odors irrespective of the saliency of the odors used. Thus, gonadal hormones were essential for both learning and maintenance of task performance across sex and odor type.We thank David Giese for help in programming the apparatus used in GNG testing and Alberto Cruz-Martin for comments on an early version of the manuscript. This work was supported by NIDCD grant DC008962 to JAC. (DC008962 - NIDCD grant)Accepted manuscrip

Relationship between fish size and otolith length for 63 species of fishes from the Eastern North Pacific Ocean

Otoliths commonly are used to determine the taxon, age, and size of fishes. This information is useful for population management, predator-prey studies, and archaeological research. The relationship between the length of a fish and the length of its otoliths remains unknown for many species of marine fishes in the Pacific Ocean. Therefore, the relationships between fish length and fish weight, and between otolith length and fish length, were developed for 63 species of fishes caught in the eastern North Pacific Ocean. We also summarized similar relationships for 46 eastern North Pacific fish species reported in the literature. The relationship between fish length and otolith length was linear, and most of the variability was explained by a simple least-squares regression (r 2 > 0.700 for 45 of 63 species). The relationship between otolith length and fish length was not significantly different between left and right otoliths for all but one fish species. Images of otoliths from 77 taxa are included to assist in the identification of species. (PDF file contains 38 pages.

PACE: Pattern Accurate Computationally Efficient Bootstrapping for Timely Discovery of Cyber-Security Concepts

Public disclosure of important security information, such as knowledge of vulnerabilities or exploits, often occurs in blogs, tweets, mailing lists, and other online sources months before proper classification into structured databases. In order to facilitate timely discovery of such knowledge, we propose a novel semi-supervised learning algorithm, PACE, for identifying and classifying relevant entities in text sources. The main contribution of this paper is an enhancement of the traditional bootstrapping method for entity extraction by employing a time-memory trade-off that simultaneously circumvents a costly corpus search while strengthening pattern nomination, which should increase accuracy. An implementation in the cyber-security domain is discussed as well as challenges to Natural Language Processing imposed by the security domain.Comment: 6 pages, 3 figures, ieeeTran conference. International Conference on Machine Learning and Applications 201

Dynamics and evaporation of defects in Mott-insulating clusters of boson pairs

Repulsively bound pairs of particles in a lattice governed by the Bose-Hubbard model can form stable incompressible clusters of dimers corresponding to finite-size n=2 Mott insulators. Here we study the dynamics of hole defects in such clusters corresponding to unpaired particles which can resonantly tunnel out of the cluster into the lattice vacuum. Due to bosonic statistics, the unpaired particles have different effective mass inside and outside the cluster, and "evaporation" of hole defects from the cluster boundaries is possible only when their quasi-momenta are within a certain transmission range. We show that quasi-thermalization of hole defects occurs in the presence of catalyzing particle defects which thereby purify the Mott insulating clusters. We study the dynamics of one-dimensional system using analytical techniques and numerically exact t-DMRG simulations. We derive an effective strong-interaction model that enables simulations of the system dynamics for much longer times. We also discuss a more general case of two bosonic species which reduces to the fermionic Hubbard model in the strong interaction limit.Comment: 12 pages, 10 figures, minor update

Usability of Tablet PC as a Remote Control Device for Biomedical Data Visualization

Interaction through multi-platform user interfaces (MPUIs), is increasingly being used in battlefield applications, telemedicine, classroom education, and engineering applications. Some of the uniqueness of these non-traditional user interfaces lies in the division of information between multiple displays and the remote control of information (e.g., using one computer to control a remote display). We preformed an exploratory study to compare three different setups: a Tablet PC with a traditional desktop, a Tablet PC with a large screen display (LSD) combination, and a desktop computer. The results showed that many users preferred the familiar Microsoft Windows widgets available on the Tablet PC; users often had difficulty generalizing their experiences' when using the Tablet PC; and the form factor of the Tablet PC worked in favor and against the user in different conditions. Our results indicate that while there are yet problems to overcome, generic handheld devices can make highly effective remote controls for virtual environments

Exact Matrix Product States for Quantum Hall Wave Functions

We show that the model wave functions used to describe the fractional quantum Hall effect have exact representations as matrix product states (MPS). These MPS can be implemented numerically in the orbital basis of both finite and infinite cylinders, which provides an efficient way of calculating arbitrary observables. We extend this approach to the charged excitations and numerically compute their Berry phases. Finally, we present an algorithm for numerically computing the real-space entanglement spectrum starting from an arbitrary orbital basis MPS, which allows us to study the scaling properties of the real-space entanglement spectra on infinite cylinders. The real-space entanglement spectrum obeys a scaling form dictated by the edge conformal field theory, allowing us to accurately extract the two entanglement velocities of the Moore-Read state. In contrast, the orbital space spectrum is observed to scale according to a complex set of power laws that rule out a similar collapse.Comment: 10 pages and Appendix, v3 published versio

A new algorithm to diagnose atrial ectopic origin from multi lead ECG systems - insights from 3D virtual human atria and torso

Rapid atrial arrhythmias such as atrial fibrillation (AF) predispose to ventricular arrhythmias, sudden cardiac death and stroke. Identifying the origin of atrial ectopic activity from the electrocardiogram (ECG) can help to diagnose the early onset of AF in a cost-effective manner. The complex and rapid atrial electrical activity during AF makes it difficult to obtain detailed information on atrial activation using the standard 12-lead ECG alone. Compared to conventional 12-lead ECG, more detailed ECG lead configurations may provide further information about spatio-temporal dynamics of the body surface potential (BSP) during atrial excitation. We apply a recently developed 3D human atrial model to simulate electrical activity during normal sinus rhythm and ectopic pacing. The atrial model is placed into a newly developed torso model which considers the presence of the lungs, liver and spinal cord. A boundary element method is used to compute the BSP resulting from atrial excitation. Elements of the torso mesh corresponding to the locations of the placement of the electrodes in the standard 12-lead and a more detailed 64-lead ECG configuration were selected. The ectopic focal activity was simulated at various origins across all the different regions of the atria. Simulated BSP maps during normal atrial excitation (i.e. sinoatrial node excitation) were compared to those observed experimentally (obtained from the 64-lead ECG system), showing a strong agreement between the evolution in time of the simulated and experimental data in the P-wave morphology of the ECG and dipole evolution. An algorithm to obtain the location of the stimulus from a 64-lead ECG system was developed. The algorithm presented had a success rate of 93%, meaning that it correctly identified the origin of atrial focus in 75/80 simulations, and involved a general approach relevant to any multi-lead ECG system. This represents a significant improvement over previously developed algorithms