Promoting High-Quality Data in OBIS: Insights from the OBIS Data Quality Assessment and Enhancement Project Team

The Ocean Biodiversity Information System (OBIS) (Klein et al. 2019) is a global database of marine biodiversity and associated environmental data, which provides critical information to researchers and policymakers worldwide. Ensuring the accuracy and consistency of the data in OBIS is essential for its usefulness and value, not only to the scientific community but also to the science-policy interface. The OBIS Data Quality Assessment and Enhancement Project Team (QCPT), formed in 2019 by the OBIS steering group, aims to assess and enhance data quality. It has been working on three categories of activities for this purpose:Data quality enhancement and managementThe OBIS QCPT organized data laundry events to identify and address data quality issues of published OBIS datasets. Furthermore, individual OBIS nodes were invited to give their data-processing presentations in the monthly meetings to foster knowledge sharing and collaborative problem-solving focused on data quality. Data quality issues and solutions highlighted in the presentations and data laundry events were documented in a dedicated GitHub repository as GitHub issues. The solutions for data quality issues and marine-specific pre-publication quality control tools, designed to identify the data quality issues, were provided as feedback to the OBIS Capacity Development Task Team. These inputs were used to create training resources (see OBIS manual, upcoming OBIS training course hosted on OceanTeacher Global Academy) aimed at preventing these issues.Standardization of OBIS data processing pipeline As OBIS uses the Darwin Core standard (Wieczorek et al. 2012), the use of standardized tests and assertions in the data processing pipeline is encouraged. To achieve this, the OBIS QCPT aligned OBIS quality checks with a subset of core tests and assertions (Chapman et al. 2020) developed by the Biodiversity Information Standards (TDWG) Biodiversity Data Quality (BDQ) Task Group 2 (TG2) (Chapman et al. 2020) as tracked in this GitHub issue. Not all default parameters of the core tests and assertions are optimal for marine biodiversity data. The OBIS QCPT met monthly to determine suitable parameters for customizing the tests. The pipeline produces a data quality report for each dataset with quality flags that indicate potential data quality issues, enabling node managers and data providers to review the flagged records.Community engagementThe OBIS QCPT led a survey among data users to gather insights into OBIS data quality issues and bridge the gap between the current implementation and user expectations. The survey findings enabled OBIS to prioritize issues to be addressed, as summarized in Section 2.2.2 of the 11th OBIS Steering Group meeting report. In addition to engaging with data users, the OBIS QCPT also served as a platform to discuss questions related to the use of Darwin Core from the nodes and provided feedback for the term discussions. In summary, the OBIS QCPT improves marine species data reliability and usability through transparent and participatory approaches, fostering continuous improvement. Collaborative efforts, standardized procedures, and knowledge sharing advance OBIS' mission of providing high quality biodiversity data for research, conservation, and ocean management

Literature-based occurrences of marine species in Venezuela

Venezuela has suffered a severe academic and research management crisis, and funding opportunities for marine research and data management have been practically absent. This has worsened over the past five years, and as a result, libraries and other institutional spaces have been repeatedly vandalized, with hundreds of records, specimens, and historical data stolen, destroyed, or burned. To avoid the loss of irreplaceable data on Venezuelan biodiversity, an initiative aimed at digitizing information to create a rich dataset of biodiversity records, with emphasis on marine protected areas for the country, as well as to fill gaps in the distribution and status of marine biodiversity in Venezuela. Around 10 institutions in the country focusing on marine science have consistently produced a wealth of information about Venezuela’s marine biodiversity in the form of specimen collections, unpublished sampled data, and research theses through the work of hundreds of researchers and students. An inventory of available data sources at these national institutions was conducted under the National Biodiversity Data Mobilization Grant and the Biodiversity Information for Development Program, together with the Global Biodiversity Information Facility (GBIF) support. All recovered and processed datasets were published in the Ocean Biodiversity Information System (OBIS) and the Global Biodiversity Information Facility (GBIF) repositories.This data collection represents a major contribution to the marine biodiversity inventory in Venezuela. It is based on numerous published papers, reports, books, and checklists provided by experts, covering a broad taxonomic collection of 3,041 marine species, with representatives of each of the five kingdoms: Animalia, Chromista, Bacteria, Plantae, and Protozoa. The datasets provide information on occurrence since 1822, extending the temporal coverage of the species occurrence inventory for Venezuela, which was established in 1879 before this project. The species occrrences are organized into 59 datasets containing 40,881 records, which represent a 28.49% contribution to the records of Venezuelan marine biodiversity reported to the OBIS (143,513 records in OBIS until November 2022). The number of records for Venezuela increased by 41.3% compared with the data available before the project. Most of the occurrences (63.47%) were registered in Marine Protected Areas. Data collection included records of non-native species, descriptions of new species, and species listed under different IUCN categories

Literature-based occurrences data of marine species in Venezuela

Venezuela has suffered a severe academic and research management crisis and funding opportunities for marine research and data management have been practically absent. This has worsened over the past five years and, as a result, libraries and other institutional spaces have been repeatedly vandalised, with hundreds of records, specimens and historical data stolen, destroyed or burned. To avoid the loss of irreplaceable data on Venezuelan biodiversity, an initiative was promoted, aimed at digitising information to create a rich dataset of biodiversity records, with emphasis on marine protected areas for the country, as well as to fill gaps in the distribution and status of marine biodiversity in Venezuela. Nighteen (19) institutions in the country focusing on marine science have consistently produced a wealth of information about Venezuela’s marine biodiversity in the form of specimen collections, unpublished sampled data and research theses through the work of hundreds of researchers and students. An inventory of available data sources at these national institutions was conducted under the National Biodiversity Data Mobilization Grant and the Biodiversity Information for Development Program, together with the Global Biodiversity Information Facility (GBIF) support. All recovered and processed datasets were published in the Ocean Biodiversity Information System (OBIS) and the Global Biodiversity Information Facility (GBIF) repositories.This occurrences data collection represents a major contribution to the marine biodiversity inventory in Venezuela. It is based on numerous published papers, reports, books and checklists provided by experts, covering a broad taxonomic collection from which we obtained species occurrences (present and absent), organised into 59 datasets containing 40,881 records. This represents a 28.49% contribution to the records of the Venezuelan marine biodiversity reported to the OBIS (143,513 records in the OBIS until November 2022). The extracted data showed 3,041 marine species, with representatives of each of the six kingdoms: Animalia, Chromista, Bacteria, Plantae, Fungi and Protozoa. The datasets provide information on occurrence since 1822, extending the temporal coverage of the species occurrence inventory for Venezuela, which was established in 1879 before this project. The number of records for Venezuela increased by 41.3% compared with the data available before the project. Most of the occurrences (63.47%) were registered in Marine Protected Areas. Data collection included records of non-native species, descriptions of new species and species listed under different IUCN categories