Caching and Distributing Statistical Analyses in R

We present the cacher package for R, which provides tools for caching statistical analyses and for distributing these analyses to others in an efficient manner. The cacher package takes objects created by evaluating R expressions and stores them in key-value databases. These databases of cached objects can subsequently be assembled into packages for distribution over the web. The cacher package also provides tools to help readers examine the data and code in a statistical analysis and reproduce, modify, or improve upon the results. In addition, readers can easily conduct alternate analyses of the data. We describe the design and implementation of the cacher package and provide two examples of how the package can be used for reproducible research.

Multi-dimensional Point Process Models in R

A software package for fitting and assessing multidimensional point process models using the R statistical computing environment is described. Methods of residual analysis based on random thinning are discussed and implemented. Features of the software are demonstrated using data on wildfire occurrences in Los Angeles County, California and earthquake occurrences in Northern California.

INTERACTING WITH DATA USING THE FILEHASH PACKAGE FOR R

The filehash package for R implements a simple key-value style database where character string keys are associated with data values that are stored on the disk. A simple interface is provided for inserting, retrieving, and deleting data from the database. Utilities are provided that allow filehash databases to be treated much like environments and lists are already used in R. These utilities are provided to encourage interactive and exploratory analysis on large datasets. Three different file formats for representing the database are currently available and new formats can easily be incorporated by third parties for use in the filehash framework

A REPRODUCIBLE RESEARCH TOOLKIT FOR R

We present a collection of R packages for conducting and distributing reproducible research using R, Sweave, and LaTeX. The collection consists of the cacheSweave, stashR, and SRPM packages which allow for the caching of computations in Sweave documents and the distribution of those cached computations via remotely accessible key-value databases. We describe the caching mechanism used by the cacheSweave package and tools that we have developed for authors and readers for the purposes of creating and interacting with reproducible documents

Caching and Distributing Statistical Analyses in R

We present the cacher package for R, which provides tools for caching statistical analyses and for distributing these analyses to others in an efficient manner. The cacher package takes objects created by evaluating R expressions and stores them in key-value databases. These databases of cached objects can subsequently be assembled into packages for distribution over the web. The cacher package also provides tools to help readers examine the data and code in a statistical analysis and reproduce, modify, or improve upon the results. In addition, readers can easily conduct alternate analyses of the data. We describe the design and implementation of the cacher package and provide two examples of how the package can be used for reproducible research