TMT-Based Quantitative Proteomics Analysis of the Fish-Borne Spoiler Shewanella putrefaciens Subjected to Cold Stress Using LC-MS/MS

Shewanella putrefaciens is a specific spoilage bacterium for fish during cold storage. To better understand the molecular mechanisms of cold stress adaptation of S. putrefaciens, tandem mass tag- (TMT-) based quantitative proteomic analysis was performed to detect the effects of cold stress on protein expression profiles in S. putrefaciens which had been cultivated at 4°C and 30°C, respectively. A total of 266670 peptide spectrum matching numbers were quantified proteins after data analysis. Of the 2292 proteins quantitatively analyzed, a total of 274 were found to be differentially expressed (DE) under cold stress compared with the nonstress control. By integrating the results of Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, 9 common KEGG terms were found notable for the cold-responsive proteins. Generally, the DE proteins involved in carbohydrate, amino acid, and fatty acid biosynthesis and metabolism were significantly upregulated, leading to a specific energy conservation survival mode. The DE proteins related to DNA repair, transcription, and translation were upregulated, implicating change of gene expression and more protein biosynthesis needed in response to cold stress

Community Structure and Soil Mineral Concentration in Relation to Plant Invasion in a Subtropical Urban and Rural Ecotone

Alien species invasion affects local community biodiversity and stability considerably, and ecosystem services and functions will accordingly be dramatically changed. Many studies have reported a correlation between invasibility and the chemical nature of soil, but the influences of understory plant community structure and soil trace element concentrations on invasibility have not been fully explored. Landscape heterogeneity in the urban and rural ecotone may alter the invasion process, and assessing the invasibility of different types of native forests may lead to a better understanding of the mechanisms by which native species resist invasion. We compared the composition, structure, diversity and stability of the understory community in abandoned fallows, severely invaded by Mikania micrantha and Borreria latifolia, and adjacent natural and planted forests in the urban and rural ecotone of Eastern Guangzhou, China. Additionally, we quantified mineral element concentrations in the topsoil (0–25 cm) most influenced by the root system of understory communities in the forest stand types. Abandoned fallows had the highest concentrations of available ferrum (Fe) and available boron (B) and the lowest concentration of total mercury (Hg) Hg among the three stand types. In contrast to various species diversity indices, the understory structure of the three stands better explained differences in community invasibility. Average understory cover significantly differed among the three stand types, and those types with the greatest number of stems in height and cover classes 1 and 2 differed the most, indicating that seedling establishment may deter invasion to a certain extent. CCA (canonical correspondence analysis) results better reflected the distribution range of each stand type and its relationship with environmental factors, and available Fe, available B, exchangeable calcium (Ca), exchangeable magnesium (Mg), cover, available copper (Cu) and total Hg , were strongly related the distribution of native and exotic understory species. Invasion weakened community stability. The stability index changed consistently with the species diversity index, and abandoned fallows understory community stability was lower than the other stand types. According to our results, both soil mineral element concentrations and community structure are related to alien species invasion. Against the backdrop of urbanization and industrialization, this information will provide forest management and planning departments with certain reference points for forest protection and invasive plant management

Temporal Changes in Community Structure over a 5-Year Successional Stage in a Subtropical Forest

In the context of global warming, the changes of forest structure, diversity, and productivity along with forest succession have always been a topic of interest for many researchers. Studying the changes in community structure, biomass, and diversity of different diameter at breast height (DBH) classes in subtropical mountainous forests during forest succession can provide data in support of future forest succession predictions and forest management. We analyzed the changes of three DBH classes in a 10-ha plot while studying subtropical mountainous forest succession in 2012 and 2017. The results showed that during forest succession, the community abundance and richness significantly decreased while biomass increased slightly. Among the three DBH classes, changes were the greatest in small trees, followed by large trees, and then medium-sized trees. The abundance, biomass, richness, and Shannon–Wiener index of small trees all decreased significantly. In forests with medium-sized trees, biomass decreased significantly and abundance did not change significantly. In large trees, abundance and biomass increased significantly. Changes were observed in environmental driving factors during forest succession. In 2012, driving factors with significant effects included total phosphorus, transmitted direct solar radiation, organic matter, and capillary water capacity. In 2017, two driving factors were total phosphorus and total potassium while the main driving factor was still total phosphorus. The results showed that during forest succession the abundance and diversity of small trees were principal components of community abundance and diversity. A reduction in small-tree abundance and diversity will decrease community abundance and diversity. Large-tree biomass was a principal component of community biomass; accumulation of large-tree biomass will increase community biomass. Schima superba Gardner and Champ. and Castanopsis carlesii (Hemsl.) Hayata are the main dominant species in this area, which can quickly form stable communities. S. superba is also a fire-resistant tree species. Therefore, in natural forest management, planting of S. superba and C. carlesii in the secondary bare land can be considered. In addition, the evergreen broad-leaved forest can be recovered to the forest structure and productivity level before selective cutting, which provides important inspiration for forest management in the region

Preservative Effects of Gelatin Active Coating Containing Eugenol and Higher CO2 Concentration Modified Atmosphere Packaging on Chinese Sea bass (Lateolabrax maculatus) during Superchilling (−0.9 °C) Storage

The purpose of this research was to explore the fresh keeping effect of modified atmosphere packaging (MAP) with different gas ratios combined with gelatin active coatings containing eugenol on Chinese sea bass stored at −0.9 °C for 36 days. The results showed that MAP3 (60% CO2/10% O2/30% N2), together with gelatin active coatings containing eugenol, could prevent water loss, which maintained high field NMR, MRI, and organoleptic evaluation results. This hurdle technology could also effectively delay the bacterial reproduction, protein degradation, and alkaline accumulation, so it showed the lowest K value, total volatile basic nitrogen, free amino acids, total viable count, Pseudomonas spp., and H2S-producing bacteria, which better maintain the quality of sea bass

Experimental Analysis of Grease Friction Properties on Sliding Textured Surfaces

There is comprehensive work on the tribological properties and lubrication mechanisms of oil lubricant used on textured surfaces, however the use of grease lubrication on textured surfaces is rather new. This research article presents an experimental study of the frictional behaviours of grease lubricated sliding contact under mixed lubrication conditions. The influences of surface texture parameters on the frictional properties were investigated using a disc-on-ring tribometer. The results showed that the friction coefficient is largely dependent on texture parameters, with higher and lower texture density resulting in a higher friction coefficient at a fixed texture depth. The sample with texture density of 15% and texture depth of 19 μm exhibited the best friction properties in all experimental conditions because it can store more grease and trap wear debris. The reduction of friction is mainly attributable to the formation of a stable grease lubrication film composed of oil film, transfer film and deposited film, and the hydrodynamic pressure effect of the surface texture, which increases the mating gap and reduces the probability of asperity contact. This result will help in understanding the tribological behaviour of grease on a textured surface and in predicting the lubrication conditions of sliding bearings for better operation in any machinery

Community Attributes Predict the Relationship between Habitat Invasibility and Land Use Types in an Agricultural and Forest Landscape

Finding ecosystem or community level indicators for habitat invasibility may provide natural resource managers with environmentally friendly measures to control alien plant invasion; yet, ecosystem invasibility remains understudied. Here, we investigated alien plant invasion into various ecosystems representing different land use types in a subtropical peri-urban area of south China. Four invasive alien species were found from five out of the six ecosystems. Lower plant diversity in both the overstory and understory was consistently associated with more severe alien plant invasion to the ecosystems. The highest total abundance and plot occurrence of the invasive plants were found in the agroforestry ecosystem representing the highest disturbance. At plot scale, an increase in invasion severity was associated with a significant decrease in overstory stem density, species richness, and diversity, but with a significant increase in overstory plant dominance. The understory community attributes in response to the increase in invasion severity followed similar patterns, except that the stem density increased with invasion severity. Higher canopy openness and thus lower leaf area index and greater understory radiation were associated with higher invasion severity of invasive plants to the understory habitat. For predicting total abundance of the invasive species, the most important variable is land use type, while for the abundance of Lantana camara and Mikania micrantha, the most important predictor variable is overstory Berger–Parker index and canopy openness, respectively. Canopy structure and understory gap light regimes were among the most important factors determining the abundance of the worst invasive plant Mikania micrantha. Our results demonstrate that land use types with varying disturbance regimes determine the spatial heterogeneity in plant diversity and community structure, which predicts alien plant invasion and habitat invasibility; and that the severity of alien plant invasion in turn is a good indicator of habitat disturbance across the ecosystems

Genome-Wide Identification and Expression Analyses of the Chitinase Gene Family in Response to White Mold and Drought Stress in Soybean (<i>Glycine max</i>)

Chitinases are enzymes catalyzing the hydrolysis of chitin that are present on the cell wall of fungal pathogens. Here, we identified and characterized the chitinase gene family in cultivated soybean (Glycine max L.) across the whole genome. A total of 38 chitinase genes were identified in the whole genome of soybean. Phylogenetic analysis of these chitinases classified them into five separate clusters, I–V. From a broader view, the I–V classes of chitinases are basically divided into two mega-groups (X and Y), and these two big groups have evolved independently. In addition, the chitinases were unevenly and randomly distributed in 17 of the total 20 chromosomes of soybean, and the majority of these chitinase genes contained few introns (≤2). Synteny and duplication analysis showed the major role of tandem duplication in the expansion of the chitinase gene family in soybean. Promoter analysis identified multiple cis-regulatory elements involved in the biotic and abiotic stress response in the upstream regions (1.5 kb) of chitinase genes. Furthermore, qRT-PCR analysis showed that pathogenic and drought stress treatment significantly induces the up-regulation of chitinase genes belonging to specific classes at different time intervals, which further verifies their function in the plant stress response. Hence, both in silico and qRT-PCR analysis revealed the important role of the chitinases in multiple plant defense responses. However, there is a need for extensive research efforts to elucidate the detailed function of chitinase in various plant stresses. In conclusion, our investigation is a detailed and systematic report of whole genome characterization of the chitinase family in soybean

Histone acetylation by HBO1 (KAT7) activates Wnt/β-catenin signaling to promote leukemogenesis in B-cell acute lymphoblastic leukemia

Abstract B-cell acute lymphoblastic leukemia (B-ALL) is an aggressive hematological disorder with a dismal prognosis. The dysregulation of histone acetylation is of great significance in the pathogenesis and progression of B-ALL. Regarded as a fundamental acetyltransferase gene, the role of HBO1 (lysine acetyltransferase 7/KAT7) in B-ALL has not been investigated. Herein, we found that HBO1 expression was elevated in human B-ALL cells and associated with poor disease-free survival. Strikingly, HBO1 knockdown inhibited viability, proliferation, and G1-S cycle progression in B-ALL cells, while provoking apoptosis. In contrast, ectopic overexpression of HBO1 enhanced cell viability and proliferation but inhibited apoptotic activation. The results of in vivo experiments also certificated the inhibitory effect of HBO1 knockdown on tumor growth. Mechanistically, HBO1 acetylated histone H3K14, H4K8, and H4K12, followed by upregulating CTNNB1 expression, resulting in activation of the Wnt/β-catenin signaling pathway. Moreover, a novel small molecule inhibitor of HBO1, WM-3835, potently inhibited the progression of B-ALL. Our data identified HBO1 as an efficacious regulator of CTNNB1 with therapeutic potential in B-ALL