Additional file 2 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 2: Supplementary Fig. 2. Boxplot showing phenotypic distribution among different wheat subspecies.Statistical significant differences are shown with different letters

Additional file 9 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 9: Supplementary Table  3. List of acronyms and their abbreviation used in this study

Additional file 3 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 3: Supplementary  Fig. 3. Genotypic variability of the 185wheat genotypes. Loading plot of the first (PC1) and second (PC2) principalcomponents showing the variation among individuals. Based on Triticum ssp.,genotypes are represented by different colored symbols indicated in the legend

Additional file 10 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 10: Supplementary Table 4. QTNs comparison with QTL identified in the literature

Additional file 5 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 5: Supplementary Fig. 5. Numbers of significant QTNs detected for 15 traits using six multi-locus GWASmethod

Additional file 6 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 6: Supplementary Fig. 6. Singular QQ plots for associatedtraits. On X axis the expected –log10pvalues, whereas observed –log10pvalues are reported on Y axis

Additional file 8 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 8: Supplementary Table 2. Molecular validation of RFL_Contig3228_2154)associated with SCSb with HRM and rhAMP assays

Additional file 4 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 4: Supplementary  Fig. 4. Intra-chromosomal LD decaydistance (kb) evaluated considering (A) the whole genome, (B) A genome, (C) Bgenome. Dashed lines indicate the r2 threshold. The intersectionpoint between the decay LD curve and the LD threshold was shown

Additional file 7 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 7: Supplementary Table 1. BLUPs values for the traits under study

Additional file 1 of Unlocking the molecular basis of wheat straw composition and morphological traits through multi-locus GWAS

Additional file 1: Supplementary  Fig. 1. Frequency distribution of BLUPsfor 15 traits among cultivars. X-axisshow BLUP values while in the y-axisthe frequency is reported