TOLKIN – Tree of Life Knowledge and Information Network: Filling a Gap for Collaborative Research in Biological Systematics

The development of biological informatics infrastructure capable of supporting growing data management and analysis environments is an increasing need within the systematics biology community. Although significant progress has been made in recent years on developing new algorithms and tools for analyzing and visualizing large phylogenetic data and trees, implementation of these resources is often carried out by bioinformatics experts, using one-off scripts. Therefore, a gap exists in providing data management support for a large set of non-technical users. The TOLKIN project (Tree of Life Knowledge and Information Network) addresses this need by supporting capabilities to manage, integrate, and provide public access to molecular, morphological, and biocollections data and research outcomes through a collaborative, web application. This data management framework allows aggregation and import of sequences, underlying documentation about their source, including vouchers, tissues, and DNA extraction. It combines features of LIMS and workflow environments by supporting management at the level of individual observations, sequences, and specimens, as well as assembly and versioning of data sets used in phylogenetic inference. As a web application, the system provides multi-user support that obviates current practices of sharing data sets as files or spreadsheets via email

Ipomoea triloba: an alien plant threatening many habitats in Turkey

Ipomoea triloba is a plant native to tropical America and has been observed in cotton fields in Antalya Province, Turkey. Ipomoea triloba was identified in 2014 after a warning from the Centre of the Farmers’ Union (Antbirlik). Subsequent field surveys showed that this plant has been considered as a weed by farmers in this region for the last two decades; it has spread in non-agricultural habitats but due to its limited presence did not receive much attention. The spread of I. triloba has increased over the last 5 years to such an extent that it cannot be controlled by existing methods including herbicides. It has established not only in agricultural areas but also in other habitats such as roadsides, irrigation channel edges and coastal regions. This paper provides the first botanical description report of I. triloba in the defined area, an evaluation of environmental and socioeconomic impacts, current status and management activities. Based on all available information the authors concluded that pest risk analysis should be conducted on I. triloba. Furthermore, it should be regarded not only as an environmental weed but also as an agricultural weed and kept under surveillance in Turkey. © 2018 The Authors. Journal compilation © 2018 OEPP/EPP