Critical Self-Organized Self-Sustained Oscillations in Large Regulatory Networks: Towards Understanding the Gene Expression Initiation

In this paper, a new model of self-organized criticality is introduced. This model, called the gene expression paradigm, is motivated by the problem of gene expression initiation in the newly-born daughter cells after mitosis. The model is fundamentally different in dynamics and properties from the well known sand-pile paradigm. Simulation experiments demonstrate that a critical total number of proteins exists below which transcription is impossible. Above this critical threshold, the system enters the regime of self-sustained oscillations with standard deviations and periods proportional to the genes’ complexities with probability one. The borderline between these two regimes is very sharp. Importantly, such a self-organization emerges without any deterministic feedback loops or external supervision, and is a result of completely random redistribution of proteins between inactive genes. Given the size of the genome, the domain of self-organized oscillatory motion is also limited by the genes’ maximal complexities. Below the critical complexity, all the regimes of self-organized oscillations are self-similar and largely independent of the genes’ complexities. Above the level of critical complexity, the whole-genome transcription is impossible. Again, the borderline between the domains of oscillations and quiescence is very sharp. The gene expression paradigm is an example of cellular automata with the domain of application potentially far beyond its biological context. The model seems to be simple enough for staging an experiment for verification of its remarkable properties

High-dimensional interior crisis in the Kuramoto-Sivashinsky equation

An investigation of interior crisis of high dimensions in an extended spatiotemporal system exemplified by the Kuramoto-Sivashinsky equation is reported. It is shown that unstable periodic orbits and their associated invariant manifolds in the Poincaré hyperplane can effectively characterize the global bifurcation dynamics of high-dimensional systems.A. C.-L. Chian, E. L. Rempel, E. E. Macau, R. R. Rosa, and F. Christianse

Nonperturbative renormalization group approach to frustrated magnets

This article is devoted to the study of the critical properties of classical XY and Heisenberg frustrated magnets in three dimensions. We first analyze the experimental and numerical situations. We show that the unusual behaviors encountered in these systems, typically nonuniversal scaling, are hardly compatible with the hypothesis of a second order phase transition. We then review the various perturbative and early nonperturbative approaches used to investigate these systems. We argue that none of them provides a completely satisfactory description of the three-dimensional critical behavior. We then recall the principles of the nonperturbative approach - the effective average action method - that we have used to investigate the physics of frustrated magnets. First, we recall the treatment of the unfrustrated - O(N) - case with this method. This allows to introduce its technical aspects. Then, we show how this method unables to clarify most of the problems encountered in the previous theoretical descriptions of frustrated magnets. Firstly, we get an explanation of the long-standing mismatch between different perturbative approaches which consists in a nonperturbative mechanism of annihilation of fixed points between two and three dimensions. Secondly, we get a coherent picture of the physics of frustrated magnets in qualitative and (semi-) quantitative agreement with the numerical and experimental results. The central feature that emerges from our approach is the existence of scaling behaviors without fixed or pseudo-fixed point and that relies on a slowing-down of the renormalization group flow in a whole region in the coupling constants space. This phenomenon allows to explain the occurence of generic weak first order behaviors and to understand the absence of universality in the critical behavior of frustrated magnets.Comment: 58 pages, 15 PS figure

Are Solar Active Regions with Major Flares More Fractal, Multifractal, or Turbulent than Others?

Multiple recent investigations of solar magnetic field measurements have raised claims that the scale-free (fractal) or multiscale (multifractal) parameters inferred from the studied magnetograms may help assess the eruptive potential of solar active regions, or may even help predict major flaring activity stemming from these regions. We investigate these claims here, by testing three widely used scale-free and multiscale parameters, namely, the fractal dimension, the multifractal structure function and its inertial-range exponent, and the turbulent power spectrum and its power-law index, on a comprehensive data set of 370 timeseries of active-region magnetograms (17,733 magnetograms in total) observed by SOHO's Michelson Doppler Imager (MDI) over the entire Solar Cycle 23. We find that both flaring and non-flaring active regions exhibit significant fractality, multifractality, and non-Kolmogorov turbulence but none of the three tested parameters manages to distinguish active regions with major flares from flare-quiet ones. We also find that the multiscale parameters, but not the scale-free fractal dimension, depend sensitively on the spatial resolution and perhaps the observational characteristics of the studied magnetograms. Extending previous works, we attribute the flare-forecasting inability of fractal and multifractal parameters to i) a widespread multiscale complexity caused by a possible underlying self-organization in turbulent solar magnetic structures, flaring and non-flaring alike, and ii) a lack of correlation between the fractal properties of the photosphere and overlying layers, where solar eruptions occur. However useful for understanding solar magnetism, therefore, scale-free and multiscale measures may not be optimal tools for active-region characterization in terms of eruptive ability or, ultimately,for major solar-flare prediction.Comment: 25 pages, 7 figures, 2 tables, Solar Phys., in pres

Measurement of the azimuthal anisotropy of Y(1S) and Y(2S) mesons in PbPb collisions at √S^{S}NN = 5.02 TeV

The second-order Fourier coefficients (υ$_{2}$) characterizing the azimuthal distributions of Υ(1S) and Υ(2S) mesons produced in PbPb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV are studied. The Υmesons are reconstructed in their dimuon decay channel, as measured by the CMS detector. The collected data set corresponds to an integrated luminosity of 1.7 nb$^{-1}$. The scalar product method is used to extract the υ$_{2}$ coefficients of the azimuthal distributions. Results are reported for the rapidity range |y| < 2.4, in the transverse momentum interval 0 < p$_{T}$ < 50 GeV/c, and in three centrality ranges of 10–30%, 30–50% and 50–90%. In contrast to the J/ψ mesons, the measured υ$_{2}$ values for the Υ mesons are found to be consistent with zero

A dynamical systems approach to experimentally observed edge localized modes in JET

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