One loop effective potential in heterotic M-theory

We have calculated the one loop effective potential of the vector multiplets arising from the compactification to five dimensions of heterotic M-theory on a Calabi-Yau manifold with h^{1,1}>1. We find that extensive cancellations between the fermionic and bosonic sectors of the theory cause the effective potential to vanish, with the exception of a higher order curvature term of the type which might arise from string corrections.Comment: Latex, 28 pages, 1 figur

Chiral Dynamics and the Low Energy Kaon-Nucleon Interaction

We examine the meson-baryon interaction in the strangeness S=-1 sector using an effective chiral Lagrangian. Potentials are derived from this Lagrangian and used in a coupled-channel calculation of the low energy observables. The potentials are constructed such that in the Born approximation the s-wave scattering amplitude is the same as that given by the effective chiral Lagrangian, up to order $q^2$. Comparison is made with the available low energy hadronic data of the coupled $K^-p, \Sigma \pi, \Lambda \pi$ system, which includes the $\Lambda (1405)$ resonance, $K^-p$ elastic and inelastic scattering, and the threshold branching ratios of the $K^-p$ decay. Good fits to the experimental data and estimates of previously unknown Lagrangian parameters are obtained.Comment: 20 pages, 10 postscript figures, uses revtex, e-mail addresses: [email protected], [email protected], [email protected]

Interacting dark matter contribution to the Galactic 511 keV gamma ray emission: constraining the morphology with INTEGRAL/SPI observations

We compare the full-sky morphology of the 511 keV gamma ray excess measured by the INTEGRAL/SPI experiment to predictions of models based on dark matter (DM) scatterings that produce low-energy positrons: either MeV-scale DM that annihilates directly into e+e- pairs, or heavy DM that inelastically scatters into an excited state (XDM) followed by decay into e+e- and the ground state.By direct comparison to the data, we find that such explanations are consistent with dark matter halo profiles predicted by numerical many-body simulations for a Milky Way-like galaxy. Our results favor an Einasto profile over the cuspier NFW distribution and exclude decaying dark matter scenarios whose predicted spatial distribution is too broad. We obtain a good fit to the shape of the signal using six fewer degrees of freedom than previous empirical fits to the 511 keV data. We find that the ratio of flux at Earth from the galactic bulge to that of the disk is between 1.9 and 2.4, taking into account that 73% of the disk contribution may be attributed to the beta decay of radioactive 26Al.Comment: 7 pages, 4 figures. Includes minor corrections, and a discussion of threshold energies in XDM models. Published in JCA

Understanding the Nexus between Alcohol Consumption, Social and Emotional Wellbeing, and higher Education Outcomes among Aboriginal and Torres Strait Islander Males in Australia

Education is a critical social determinant of health, particularly in the context of Aboriginal and Torres Strait Islander health and well-being. There is also a broad array of other health risk factors that intersect with these social and cultural determinants of health. Overall, an in-depth examination of the complex health–education nexus is needed. This paper provides a commentary on interrelationships between health risk factors, their impact on education trajectories, and their implications for Aboriginal and Torres Strait Islander males

Super-Hubbard models and applications

We construct XX- and Hubbard- like models based on unitary superalgebras gl(N|M) generalising Shastry's and Maassarani's approach of the algebraic case. We introduce the R-matrix of the gl(N|M) XX model and that of the Hubbard model defined by coupling two independent XX models. In both cases, we show that the R-matrices satisfy the Yang--Baxter equation, we derive the corresponding local Hamiltonian in the transfer matrix formalism and we determine the symmetry of the Hamiltonian. Explicit examples are worked out. In the cases of the gl(1|2) and gl(2|2) Hubbard models, a perturbative calculation at two loops a la Klein and Seitz is performed.Comment: 26 page

Two-Flavor Staggered Fermion Thermodynamics at N_t = 12

We present results of an ongoing study of the nature of the high temperature crossover in QCD with two light fermion flavors. These results are obtained with the conventional staggered fermion action at the smallest lattice spacing to date---approximately 0.1 fm. Of particular interest are a study of the temperature of the crossover a determination of the induced baryon charge and baryon susceptibility, the scalar susceptibility, and the chiral order parameter, used to test models of critical behavior associated with chiral symmetry restoration. From our new data and published results for N_t = 4, 6, and 8, we determine the QCD magnetic equation of state from the chiral order parameter using O(4) and mean field critical exponents and compare it with the corresponding equation of state obtained from an O(4) spin model and mean field theory. We also present a scaling analysis of the Polyakov loop, suggesting a temperature dependent ``constituent quark free energy.''Comment: LaTeX 25 pages, 15 Postscript figure

Improved detection by next-generation sequencing of pyrazinamide resistance in mycobacterium tuberculosis isolates

Technical limitations of common tests used for detecting pyrazinamide (PZA) resistance in Mycobacterium tuberculosis (MTB) isolates pose challenges for comprehensive and accurate descriptions of drug resistance in patients with multi-drug resistant tuberculosis (MDR-TB) . In this study, a 606 base pair fragment (comprising the pncA coding region plus promoter) was sequenced using Ion Torrent next generation sequencing (NGS) for detecting associated PZA resistance mutations in 90 re-cultured, MDR-TB isolates from an archived series collected in 2001. These 90 isolates were previously Sanger sequenced, with 55 (62%) designated as carrying wild type pncA gene and 33 (38%) showing mutations. Also earlier, PZA susceptibility of the isolates was determined using the Bactec 460 TB system and the Wayne test. In this study, isolates were re-cultured and susceptibility testing performed in Bactec 960 MGIT. Concordance between NGS and MGIT results was 87% (n = 90), and with the Bactec 460, Wayne test, and pncA gene Sanger sequencing, 82% (n = 88), 83% (n = 88), and 89% (n = 88), respectively. NGS confirmed the majority of pncA mutations detected by Sanger sequencing, but revealed several new and mixed-strain mutations that resolved discordancy in other phenotypic results. Importantly, in 53% (18/34) of these isolates, pncA mutations were located in the 151-360 region, and warrants further exploration. In these isolates, with known resistance to rifampicin, NGS of pncA improved PZA resistance detection sensitivity to 97% and specificity to 94% using NGS as the gold standard, and helped to resolve discordant results from conventional methodologies.University of Pretoria, the South African Medical Research Council, and the National Research Foundation of South Africa.http://jcm.asm.org2016-06-30hb201

Multi- and extensively drug resistant mycobacterium tuberculosis in South Africa : a molecular analysis of historical isolates

Modern advances in genomics provide an opportunity to reinterpret historical bacterial culture collections. In this study, genotypic antibiotic resistance profiles of Mycobacterium tuberculosis isolates from a historical 20-year-old multidrug-resistant tuberculosis (MDR-TB) culture collection in South Africa are described. DNA samples extracted from the phenotypically MDR-TB isolates (n = 240) were assayed by Hain line probe assay (LPA) for the confirmation of MDR-TB and by Illumina Miseq whole-genome sequencing (WGS) for the characterization of mutations in eight genes (rpoB, katG, inhA, rpsL, pncA, embB, gyrA, and rrs) that are known to code for resistance to commonly used anti-TB agents. LPA identified 71.3% of the TB isolates as MDR-TB, 18.3% as rifampin (RIF) monoresistant, 2% as isoniazid (INH) monoresistant, and 8.3% as susceptible to both RIF and INH (RIF+INH). In a subset of 42 randomly selected isolates designated as RIF+INH resistant by Löwenstein-Jensen (LJ) culture in 1993, LPA and WGS results confirmed MDR-TB. In all five INH-monoresistant isolates by LPA and in all but one (the wild type) of the 34 successfully sequenced RIF-monoresistant isolates, WGS revealed matching mutations. Only 26% of isolates designated as susceptible by LPA, however, were found to be wild type by WGS. Novel mutations were found in the rpoB (Thr480Ala, Gln253Arg, Val249Met, Val251Tyr, Val251Phe), katG (Trp477STOP, Gln88STOP, Trp198STOP, Trp412STOP), embB (Thr11Xaa, Gln59Pro), and pncA (Thr100Ile, Thr159Ala, Ala134Arg, Val163Ala, Thr153Ile, DelGpos7, Phe106Ser) genes. Three MDR-TB isolates showed mutations in both the gyrA and rrs genes, suggesting that extensively drug-resistant tuberculosis existed in South Africa well before its formal recognition in 2006.The Global Infectious Diseases Research Training Fogarty Fellowship, the University of Pretoria; the South African Medical Research Council and the National Research Foundation of South Africa.http://jcm.asm.org2018-10-31hj2018Medical Microbiolog

Next-generation ion torrent sequencing of drug resistance mutations in Mycobacterium tuberculosis strains

A novel protocol for full-length Mycobacterium tuberculosis gene analysis of first- and second-line drug resistance was developed using the Ion Torrent Personal Genome Machine (PGM). Five genes—rpoB (rifampin), katG (isoniazid), pncA (pyrazinamide), gyrA (ofloxacin/fluoroquinolone), and rrs (aminoglycosides)—were amplified and sequenced, and results were compared to those obtained by genotypic Hain line probe assay (LPA) and phenotypic Bactec MGIT 960 analysis using 26 geographically diverse South African clinical isolates collected between July and November 2011. Ion Torrent sequencing exhibited 100% (26/26) concordance to phenotypic resistance obtained by MGIT 960 culture and genotypic rpoB and katG results by LPA. In several rifampin- resistant isolates, Ion Torrent sequencing revealed uncommon substitutions (H526R and D516G) that did not have a defined mutation by LPA. Importantly, previously uncharacterized mutations in rpoB (V194I), rrs (G878A), and pncA (Q122Stop) genes were observed. Ion Torrent sequencing may facilitate tracking and monitoring geographically diverse multidrug- resistant and extensively drug-resistant strains and could potentially be integrated into selected regional and reference settings throughout Africa, India, and China.http://jcm.asm.org/am201