The bacterial biome of ticks and their wildlife hosts at the urban–wildland interface

Advances in sequencing technologies have revealed the complex and diverse microbial communities present in ticks (Ixodida). As obligate blood-feeding arthropods, ticks are responsible for a number of infectious diseases that can affect humans, livestock, domestic animals and wildlife. While cases of human tick-borne diseases continue to increase in the northern hemisphere, there has been relatively little recognition of zoonotic tick-borne pathogens in Australia. Over the past 5 years, studies using high-throughput sequencing technologies have shown that Australian ticks harbour unique and diverse bacterial communities. In the present study, free-ranging wildlife (n=203), representing ten mammal species, were sampled from urban and peri-urban areas in New South Wales (NSW), Queensland (QLD) and Western Australia (WA). Bacterial metabarcoding targeting the 16S rRNA locus was used to characterize the microbiomes of three sample types collected from wildlife: blood, ticks and tissue samples. Further sequence information was obtained for selected taxa of interest. Six tick species were identified from wildlife: Amblyomma triguttatum, Ixodes antechini, Ixodes australiensis, Ixodes holocyclus, Ixodes tasmani and Ixodes trichosuri. Bacterial 16S rRNA metabarcoding was performed on 536 samples and 65 controls, generating over 100 million sequences. Alpha diversity was significantly different between the three sample types, with tissue samples displaying the highest alpha diversity (P<0.001). Proteobacteria was the most abundant taxon identified across all sample types (37.3 %). Beta diversity analysis and ordination revealed little overlap between the three sample types (P<0.001). Taxa of interest included Anaplasmataceae, Bartonella, Borrelia, Coxiellaceae, Francisella, Midichloria, Mycoplasma and Rickettsia. Anaplasmataceae bacteria were detected in 17.7% (95/536) of samples and included Anaplasma, Ehrlichia and Neoehrlichia species. In samples from NSW, ‘Ca. Neoehrlichia australis’, ‘Ca. Neoehrlichia arcana’, Neoehrlichia sp. and Ehrlichia sp. were identified. A putative novel Ehrlichia sp. was identified from WA and Anaplasma platys was identified from QLD. Nine rodent tissue samples were positive for a novel Borrelia sp. that formed a phylogenetically distinct clade separate from the Lyme Borrelia and relapsing fever groups. This novel clade included recently identified rodent-associated Borrelia genotypes, which were described from Spain and North America. Bartonella was identified in 12.9% (69/536) of samples. Over half of these positive samples were obtained from black rats (Rattus rattus), and the dominant bacterial species identified were Bartonella coopersplainsensis and Bartonella queenslandensis. The results from the present study show the value of using unbiased high-throughput sequencing applied to samples collected from wildlife. In addition to understanding the sylvatic cycle of known vector-associated pathogens, surveillance work is important to ensure preparedness for potential zoonotic spillover events

On Stable Sector in Supermembrane Matrix Model

We study the spectrum of SU(2) x SO(2) matrix supersymmetric quantum mechanics. We use angular coordinates that allow us to find an explicit solution of the Gauss law constraints and single out the quantum number n (the Lorentz angular momentum). Energy levels are four-fold degenerate with respect to n and are labeled by n_q, the largest n in a quartet. The Schr\"odinger equation is reduced to two different systems of two-dimensional partial differential equations. The choice of a system is governed by n_q. We present the asymptotic solutions for the systems deriving thereby the asymptotic formula for the spectrum. Odd n_q are forbidden, for even n_q the spectrum has a continuous part as well as a discrete one, meanwhile for half-integer n_q the spectrum is purely discrete. Taking half-integer n_q one can cure the model from instability caused by the presence of continuous spectrum.Comment: 29 pages, 5 figure

Constraining the primordial spectrum of metric perturbations from gravitino and moduli production

We consider the production of gravitinos and moduli fields from quantum vacuum fluctuations induced by the presence of scalar metric perturbations at the end of inflation. We obtain the corresponding occupation numbers, up to first order in perturbation theory, in terms of the power spectrum of the metric perturbations. We compute the limits imposed by nucleosynthesis on the spectral index $n_s$ for different models with constant $n_s$. The results show that, in certain cases, such limits can be as strong as $n_s<1.12$, which is more stringent than those coming from primordial black hole production.Comment: 16 pages, LaTeX, 5 figures. Corrected figures, new references included. Final version to appear in Phys. Rev.

Neutral winds in the polar thermosphere as measured from dynamics explorer

Remote sensing measurements of the meridional thermospheric neutral wind using the Fabry-Perot Interferometer on Dynamics Explorer have been combined with measurements of the zonal component using the Wind and Temperature Spectrometer on the same spacecraft. The two data sets with appropriate spatial phasing and averaging determine the vector wind along the track of the polar orbiting spacecraft. A study of fifty-eight passes over the Southern (sunlit) pole has enabled the average Universal Time dependence of the wind field to be determined for essentially a single solar local time cut. The results show the presence of a "back-ground" wind field driven by solar EUV heating upon which is superposed a circulating wind field driven by high latitude momentum and energy sources.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/24099/1/0000356.pd

Electroweak Symmetry Breaking via UV Insensitive Anomaly Mediation

Anomaly mediation solves the supersymmetric flavor and CP problems. This is because the superconformal anomaly dictates that supersymmetry breaking is transmitted through nearly flavor-blind infrared physics that is highly predictive and UV insensitive. Slepton mass squareds, however, are predicted to be negative. This can be solved by adding D-terms for U(1)_Y and U(1)_{B-L} while retaining the UV insensitivity. In this paper we consider electroweak symmetry breaking via UV insensitive anomaly mediation in several models. For the MSSM we find a stable vacuum when tanbeta < 1, but in this region the top Yukawa coupling blows up only slightly above the supersymmetry breaking scale. For the NMSSM, we find a stable electroweak breaking vacuum but with a chargino that is too light. Replacing the cubic singlet term in the NMSSM superpotential with a term linear in the singlet we find a stable vacuum and viable spectrum. Most of the parameter region with correct vacua requires a large superpotential coupling, precisely what is expected in the ``Fat Higgs'' model in which the superpotential is generated dynamically. We have therefore found the first viable UV complete, UV insensitive supersymmetry breaking model that solves the flavor and CP problems automatically: the Fat Higgs model with UV insensitive anomaly mediation. Moreover, the cosmological gravitino problem is naturally solved, opening up the possibility of realistic thermal leptogenesis.Comment: 27 pages, 3 figures, 1 tabl

Discrete symmetries, invisible axion and lepton number symmetry in an economic 3-3-1 model

We show that Peccei-Quinn and lepton number symmetries can be a natural outcome in a 3-3-1 model with right-handed neutrinos after imposing a Z_11 x Z_2 symmetry. This symmetry is suitably accommodated in this model when we augmented its spectrum by including merely one singlet scalar field. We work out the breaking of the Peccei-Quinn symmetry, yielding the axion, and study the phenomenological consequences. The main result of this work is that the solution to the strong CP problem can be implemented in a natural way, implying an invisible axion phenomenologically unconstrained, free of domain wall formation and constituting a good candidate for the cold dark matter.Comment: 17 pages, Revtex

QED3 theory of underdoped high temperature superconductors

Low-energy theory of d-wave quasiparticles coupled to fluctuating vortex loops that describes the loss of phase coherence in a two dimensional d-wave superconductor at T=0 is derived. The theory has the form of 2+1 dimensional quantum electrodynamics (QED3), and is proposed as an effective description of the T=0 superconductor-insulator transition in underdoped cuprates. The coupling constant ("charge") in this theory is proportional to the dual order parameter of the XY model, which is assumed to be describing the quantum fluctuations of the phase of the superconducting order parameter. The principal result is that the destruction of phase coherence in d-wave superconductors typically, and immediately, leads to antiferromagnetism. The transition can be understood in terms of the spontaneous breaking of an approximate "chiral" SU(2) symmetry, which may be discerned at low enough energies in the standard d-wave superconductor. The mechanism of the symmetry breaking is analogous to the dynamical mass generation in the QED3, with the "mass" here being proportional to staggered magnetization. Other insulating phases that break chiral symmetry include the translationally invariant "d+ip" and "d+is" insulators, and various one dimensional charge-density and spin-density waves. The theory offers an explanation for the rounded d-wave-like dispersion seen in ARPES experiments on Ca2CuO2Cl2 (F. Ronning et. al., Science 282, 2067 (1998)).Comment: Revtex, 20 pages, 5 figures; this is a much extended follow-up to the Phys. Rev. Lett. vol.88, 047006 (2002) (cond-mat/0110188); improved presentation, many additional explanations, comments, and references added, sec. IV rewritten. Final version, to appear in Phys. Rev.

An introduction to Dangerous ideas in zoology

Dangerous ideas are those that challenge the status quo, ignore political correctness or, if followed, lead to an unsettling series of consequences (Pinker 2006). As practising zoologists, our ongoing concern relates to the long-term survival of our native wildlife across all land tenures and the marine environment, and protecting natural areas in perpetuity. We hoped that a day of dangerous zoological ideas would stimulate fresh thinking and discussion about how to meet the challenges in using science to help conserve wildlife in the 21st century. While we as editors have a view on what comprises a dangerous idea (and a solid zoological idea), we were most reluctant to circumscribe our speakers and their papers. As a consequence, the papers in this volume reveal a remarkable take on what is dangerous, or at least what is considered dangerous and by whom. Some authors pose dangerous new ideas to solve difficult zoological challenges, others highlighted dangers in the misinterpretation of science and make a call for change, while others revealed hidden dangers in zoological ideas that are popular with the public but are yet to be fully thought through. Collectively the papers in this volume reveal that within the discipline of zoology, the battleground of ideas is awash with tough contests. Here though, our focus is on understanding and conserving our native fauna and, to that end, the Royal Zoological Society of NSW is keen to be dangerous in a world locked more into economic growth than an appreciation of our natural heritage and how to conserve it

Molecular surveillance of piroplasms in ticks from small and medium-sized urban and peri-urban mammals in Australia

Natural landscape alterations as a consequence of urbanisation are one of the main drivers in the movements of wildlife into metropolitan and peri-urban areas. Worldwide, these wildlife species are highly adaptable and may be responsible for the transmission of tick-borne pathogens including piroplasms (Babesia, Theileria and Cytauxzoon spp.) that cause piroplasmosis in animals and occasionally in humans. Little is known about piroplasms in the ticks of urban wildlife in Australia. Ticks from long-nosed bandicoots (Perameles nasuta; n = 71), eastern-barred bandicoots (Perameles gunnii; n = 41), northern-brown bandicoots (Isoodon macrourus; n = 19), southern-brown bandicoots (Isoodon obesulus; n = 4), bandicoot sp. (n = 2), flying foxes (Pteropus sp.; n = 3), black rats (Rattus rattus; n = 7), bush rats (Rattus fuscipes; n = 4), brushtail possums (Trichosurus vulpecula; n = 19), ringtail possums (Pseudocheirus peregrinus; n = 12), short-eared possums (Trichosurus caninus; n = 6), possum sp. (Trichosurus sp.; n = 8), and red foxes (Vulpes vulpes; n = 12) were analysed using piroplasm-specific 18S primers and Sanger sequencing. Seven Ixodes tasmani ticks from long-nosed bandicoots and bandicoots sp., three I. tasmani ticks and one Ixodes holocyclus tick from brushtail possums, and one Haemaphysalis longicornis tick from a red fox were positive for piroplasms. New genotypes, with sequences sharing 98% nucleotide similarities with Theileria sp. K1 detected in a burrowing bettong (Bettongia lesueur), were identified from bandicoot ticks. New genotypes were detected in ticks from brushtail possums, which shared 98% similarity with a Babesia sp. (JQ682877) previously identified in marsupials. Theileria orientalis was identified in the H. longicornis tick from the red fox. Babesia and Theileria spp. in the ticks parasitizing bandicoots and brushtail possums clustered closely with respective Babesia and Theileria clades derived from Australian marsupials. This represents the first detection of piroplasms in ticks parasitizing brushtail possums and a red fox in Australia

Shifting age structure of house mice during a population outbreak

A technique to age wild house mice, Mus domesticus, in Australia using the dry weight of the eye lens based on known-age mice from semi-natural enclosures is described and presented for 3-32-week-old mice. At four sampling periods from November 2000 to September 2001, the age frequency distributions of free-living house mice were determined using this relationship. The distributions of ages shifted between seasons from relatively young animals at the beginning of the breeding season (November 2001), coinciding with low mouse abundance, to progressively older distributions in each sample as breeding continued, ending with the cessation of breeding and a population crash before the last sample. No significant difference was detected between the sexes at any of the four periods. These results are consistent with the suggestion that the formation of mouse outbreaks requires a shift in age structure towards younger mice