Variational bounds on the energy dissipation rate in body-forced shear flow

A new variational problem for upper bounds on the rate of energy dissipation in body-forced shear flows is formulated by including a balance parameter in the derivation from the Navier-Stokes equations. The resulting min-max problem is investigated computationally, producing new estimates that quantitatively improve previously obtained rigorous bounds. The results are compared with data from direct numerical simulations.Comment: 15 pages, 7 figure

Internal heating driven convection at infinite Prandtl number

We derive an improved rigorous bound on the space and time averaged temperature $$ of an infinite Prandtl number Boussinesq fluid contained between isothermal no-slip boundaries thermally driven by uniform internal heating. A novel approach is used wherein a singular stable stratification is introduced as a perturbation to a non-singular background profile, yielding the estimate $\geq 0.419[R\log(R)]^{-1/4}$ where $R$ is the heat Rayleigh number. The analysis relies on a generalized Hardy-Rellich inequality that is proved in the appendix

"Ultimate state" of two-dimensional Rayleigh-Benard convection between free-slip fixed temperature boundaries

Rigorous upper limits on the vertical heat transport in two dimensional Rayleigh-Benard convection between stress-free isothermal boundaries are derived from the Boussinesq approximation of the Navier-Stokes equations. The Nusselt number Nu is bounded in terms of the Rayleigh number Ra according to $Nu \leq 0.2295 Ra^{5/12}$ uniformly in the Prandtl number Pr. This Nusselt number scaling challenges some theoretical arguments regarding the asymptotic high Rayleigh number heat transport by turbulent convection.Comment: 4 page

Resonant Activation Phenomenon for Non-Markovian Potential-Fluctuation Processes

We consider a generalization of the model by Doering and Gadoua to non-Markovian potential-switching generated by arbitrary renewal processes. For the Markovian switching process, we extend the original results by Doering and Gadoua by giving a complete description of the absorption process. For all non-Markovian processes having the first moment of the waiting time distributions, we get qualitatively the same results as in the Markovian case. However, for distributions without the first moment, the mean first passage time curves do not exhibit the resonant activation minimum. We thus come to the conjecture that the generic mechanism of the resonant activation fails for fluctuating processes widely deviating from Markovian.Comment: RevTeX 4, 5 pages, 4 figures; considerably shortened version accepted as a brief report to Phys. Rev.

Energy Dissipation in Fractal-Forced Flow

The rate of energy dissipation in solutions of the body-forced 3-d incompressible Navier-Stokes equations is rigorously estimated with a focus on its dependence on the nature of the driving force. For square integrable body forces the high Reynolds number (low viscosity) upper bound on the dissipation is independent of the viscosity, consistent with the existence of a conventional turbulent energy cascade. On the other hand when the body force is not square integrable, i.e., when the Fourier spectrum of the force decays sufficiently slowly at high wavenumbers, there is significant direct driving at a broad range of spatial scales. Then the upper limit for the dissipation rate may diverge at high Reynolds numbers, consistent with recent experimental and computational studies of "fractal-forced'' turbulence.Comment: 14 page

Variational bound on energy dissipation in turbulent shear flow

We present numerical solutions to the extended Doering-Constantin variational principle for upper bounds on the energy dissipation rate in plane Couette flow, bridging the entire range from low to asymptotically high Reynolds numbers. Our variational bound exhibits structure, namely a pronounced minimum at intermediate Reynolds numbers, and recovers the Busse bound in the asymptotic regime. The most notable feature is a bifurcation of the minimizing wavenumbers, giving rise to simple scaling of the optimized variational parameters, and of the upper bound, with the Reynolds number.Comment: 4 pages, RevTeX, 5 postscript figures are available as one .tar.gz file from [email protected]

Transcription factor search for a DNA promoter in a three-states model

To ensure fast gene activation, Transcription Factors (TF) use a mechanism known as facilitated diffusion to find their DNA promoter site. Here we analyze such a process where a TF alternates between 3D and 1D diffusion. In the latter (TF bound to the DNA), the TF further switches between a fast translocation state dominated by interaction with the DNA backbone, and a slow examination state where interaction with DNA base pairs is predominant. We derive a new formula for the mean search time, and show that it is faster and less sensitive to the binding energy fluctuations compared to the case of a single sliding state. We find that for an optimal search, the time spent bound to the DNA is larger compared to the 3D time in the nucleus, in agreement with recent experimental data. Our results further suggest that modifying switching via phosphorylation or methylation of the TF or the DNA can efficiently regulate transcription.Comment: 4 pages, 3 figure