Microbiological evidences of methanotriphic activity in the soils of the geothermal area of Pantelleria island (Italy)

Methane plays an important role in the Earth\u2019s atmospheric chemistry and radiative balance being the second most important greenhouse gas after carbon dioxide. Methane is released to the atmosphere by a wide number of sources, both natural and anthropogenic, with the latter being twice as large as the former. It has recently been established that significant amounts of geological methane, produced within the Earth\u2019s crust, are currently released naturally into the atmosphere. Active or recent volcanic/geothermal areas represent one of these sources of geological methane. Microbial oxidation in soils contributes for about 3-9% to the total removal of CH4 from the atmosphere. Recent studies evidenced methanotrophic activity also in soils of volcanic/geothermal areas notwithstanding their harsh environmental conditions (high temperatures, low pH and high concentrations of H2S and NH3). The purpose of our study was to verify the methanotrophic potential and the bacterial diversity of the soils of the main geothermal area of Pantelleria island (Italy). Laboratory incubation experiments with soil samples collected at the main exhalative area showed methane consumption values of up to 9500 ng per g of dry soil per hour while soils collected outside the geothermal area less than 6 ng/g/h. Geothermal soils showed their maximum methane consumption in the shallowest part of the soil profile (0-3 cm) mantaining high values (>100 ng/g/h) at least up to dephts of 15 cm. Furthermore they showed the maximum consumption at about 37\ub0C, showing a still recognizable consumption (>20 ng/g/h) at 80\ub0C, and a positive correlation with the methane concentration in the incubation atmosphere. These results can be considered a clear evidence of the presence of methanotrophs. In order to evaluate the bacterial diversity, soil metagenomic DNA was extracted from Le Favare and analysed using a Temporal Temperature Gradient Electrophoresis (TTGE) analysis of the amplified Bacterial 16S rRNA gene. The amplification of metagenomic DNA with primers targeting Proteobacterial and Verrucomicrobial MMO (methane monooxygenase) genes is in progress. Enrichment cultures on a mineral medium in a CH4-enriched (25%) atmosphere allowed to isolate different strains that are under characterization

The occurrence of mycorrhizal fungi in Betula aetnensis Raf. roots: from ecological role to conservation strategies

Betula aetnensis Raf. is an endemic tree species of particular conservation value. It only thrives in the north-eastern slopes of Mount Etna (Sicily), from 1200 to 2100 m a.s.l. This pioneer plant is able to begin primary succession on nutrient-poor and water-limited soils (C = 0.17%; N = 0.05 \u2030; P2O5 = 4.1 ppm), where beneficial mycorrhizal fungi (MF) may play a crucial role. In order to investigate MF role in B. aetnensis, plant roots from natural sites and nursery grown specimens were analyzed for both ectomycorrhizal and endomycorrhizal structures. Typical structures of both symbiosis were detected by root staining and morphological observations. Ectomycorrhizae (EM) were more abundant in natural sites ( 4888%) than in nursery ( 4877%). Clear morphological differences in the EM root tips suggest the occurrence of different fungal species. About 50% of roots had arbuscular structures, both in natural habitats and nursery. The community structure of EM and AM fungal symbionts was characterized by DGGE analysis. Mycorrhizal dependence trials are in progress to elucidate the relative importance of ectoand endomycorrhizal symbionts for this endemism, whose conservation could be strongly linked to mutualistic associations established at root level

Blue biotechnology: enhancement of bioremediation using bacterial biofilms on biodegradable scaffolds

Petroleum hydrocarbons are still the most threatening environmental pollutants. A promising non invasive and low-cost technology for the treatment of contaminated sites is based on bioremediation by biodegrading microorganism endowed with catabolic ability towards oil and derivatives. New methods are needed to enhance and optimize natural biodegradation, such as the immobilization of hydrocarbons degraders in many types of supports. We developed a scaffold-bacteria bioremediation system to clean up oil contamination based on degradable 3D scaffolds. The polycaprolactone component is biodegradable, produced in the melt, i.e. at low cost and without the use of toxic solvents. The biofilm is made of highly performing HC-degrading bacteria such as the marine hydrocarbonoclastic bacteria (HCB) (1) or solid n-alkane degrading Actinobacteria (2, 3). The bacterial biofilm is observed within the whole structure of scaffold using scanning electron microscopy. The bioremediation efficiency of such systems was tested on crude oil by GC-FID analysis and compared whit planktonic cells. The biofilms formation was a promoting factor for biodegradation showing hydrocarbon removal up to 70% and 15% more in respect to the planktonic cells. Increasing availability of the contaminants and a better interaction between the hydrophobic substrate and the bacterial cells resulted in developing the degradation rate. Biofilm-mediated bioremediation is a new tool to be developed for bioremediation of acquatic system

Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance

Indexación: Web of Science; Scopus.The Atacama Desert hosts diverse ecosystems including salt flats and shallow Andean lakes. Several heavy metals are found in the Atacama Desert, and microorganisms growing in this environment show varying levels of resistance/tolerance to copper, tellurium, and arsenic, among others. Herein, we report the genome sequence and comparative genomic analysis of a new Exiguobacterium strain, sp. SH31, isolated from an altiplanic shallow athalassohaline lake. Exiguobacterium sp. SH31 belongs to the phylogenetic Group II and its closest relative is Exiguobacterium sp. S17, isolated from the Argentinian Altiplano (95% average nucleotide identity). Strain SH31 encodes a wide repertoire of proteins required for cadmium, copper, mercury, tellurium, chromium, and arsenic resistance. Of the 34 Exiguobacterium genomes that were inspected, only isolates SH31 and S17 encode the arsenic efflux pump Acr3. Strain SH31 was able to grow in up to 10 mM arsenite and 100 mM arsenate, indicating that it is arsenic resistant. Further, expression of the ars operon and acr3 was strongly induced in response to both toxics, suggesting that the arsenic efflux pump Acr3 mediates arsenic resistance in Exiguobacterium sp. SH31.http://journal.frontiersin.org/article/10.3389/fmicb.2017.00456/ful

Isolation and Characterization of Oil-Degrading Bacteria from Bilge Water

Twenty-one oil-degrading bacteria were isolated from bilge water. Based on a high growth rate on crude oil and on hydrocarbon degradation ability, 7 strains were selected (from 21 isolated) for further studies. 16S rRNA gene sequencing showed that isolated strains were affiliated to Bacillus, Pseudomonas and Halomonas genera; in particular, isolate BW-B12 (Bacillus sp., 99%), BW-C12 (Halomonas boliviensis, 99%) and BW-E12 (Halomonas boliviensis, 98%) were the best crude-oil degraders; after 10 days of cultivation in ONR 7a mineral medium supplemented with crude oil as single carbon source BW-B12, BW-C12 and BW-E12 showed a degradation rate of 80, 60 and 59%, respectively. The strains showed also a high emulsification activity and biosurfactants production. Obtained results give an important contribution in order to utilize these bilge water autochthonous microorganisms in processes of bioremediation of marine environment chronically polluted from saline oily wast

Restoration practices in Mediterranean habitats using native woody species

Since the beginning of the XXI century, Legambiente (a national environmental association), supported by the University of Palermo, has launched several naturalization projects within three Sicilian nature reserves: 1)Isola di Lampedusa (Agrigento Province); 2)Macalube di Aragona (Agrigento Province); 3)Lago Sfondato (Caltanissetta Province). Interventions were carried out on bare lands and degraded sites where natural vegetation cover was almost completely disappeared. The main aim was to restore native habitats following the principles of ecological restoration. Accordingly, differently from the classical approach, consisting in the use of preparatory species, usually Pines, native shrubs and trees were selected and used in the field