Community shift of ammonia-oxidizing bacteria along an anthropogenic pollution gradient from the Pearl River Delta to the South China Sea

The phylogenetic diversity and abundance of ammonia-oxidizing beta-proteobacteria (beta-AOB) was analyzed along an anthropogenic pollution gradient from the coastal Pearl River Delta to the South China Sea using the ammonia monooxygenase subunit A (amoA) gene. Along the gradient from coastal to the open ocean, the phylogenetic diversity of the dominant genus changed from Nitrosomonas to Nitrosospira, indicating the niche specificity by these two genera as both salinity and anthropogenic influence were major factors involved. The diversity of bacterial amoA gene was also variable along the gradient, with the highest in the deep-sea sediments, followed by the marshes sediments and the lowest in the coastal areas. Within the Nitrosomonas-related clade, four distinct lineages were identified including a putative new one (A5-16) from the different sites over the large geographical area. In the Nitrosospira-related clade, the habitat-specific lineages to the deep-sea and coastal sediments were identified. This study also provides strong support that Nitrosomonas genus, especially Nitrosomonas oligotropha lineage (6a) could be a potential bio-indicator species for pollution or freshwater/wastewater input into coastal environments. A suite of statistical analyses used showed that water depth and temperature were major factors shaping the community structure of beta-AOB in this study area

Etching of multimode optical glass fibers: A new method for shaping the measuring tip and immobilization of indicator dyes in recessed fiber-optic microprobes

© 2015 Elsevier B.V. All rights reserved. We describe a new procedure for making recessed tips on multimode optical glass fibers. The method is based on etching fiber tips in 40% hydrofluoric acid for defined immersion times. As the etching velocity decreases radially from the core center in multimode graded index fibers, a recess can be formed in the tip of flat-cut tapered or untapered fibers. Etched fiber tips showed improved focussing of excitation light coupled into the fiber at the opposite end, and very efficient excitation of thin layers of optical indicators immobilized into the recess. The sensor chemistry is well protected when immobilized in recessed fiber tips and allows the construction of O2 microoptodes with improved mechanical stability that can measure repeatedly even in very cohesive biofilms, tissue and dry soil

Observations on microbial activity in acidified pig slurry

Acidification of pig slurry to pH 5.5 is used as a measure to reduce ammonia emission from pits and storages. The slurry is acidified with sulphuric acid in a process tank and pumped back to the slurry pits or to a storage tank. We investigated the effect of acidification on microbial activity. Oxygen consumption rate, methanogenesis and sulphate reduction were all reduced by more than 98% in the stored acidified slurry compared to untreated slurry. Despite higher sulphate concentration, the microbial metabolism was greatly compromised or absent in the acidified slurry. This could be explained by the high concentration of protonized short-chained volatile fatty acids in the acidified slurry (approximately 25 mM, compared to untreated slurry <0.1 mM), which act as an uncoupling agent of the cell membrane potential and thereby arrest microbial metabolism. In total the consequences of slurry acidification are greatly reduced production rates and loss of sulphide and methane, and eliminated loss of ammonia. On the other hand, increased volatilization and loss of smelly fatty acids is to be expected. © 2008 IAgrE

Weak diurnal changes in the biochemical properties and benthic macrofauna of urbanised mangrove forests and mudflats

Diurnal changes in the biochemical properties and the benthic macrofaunal assemblage of sediments in urbanised mangrove forests and their adjacent mudflats in Sydney Harbour were investigated. Behavioural and physiological changes in the microphytobenthos between day and night were predicted to cause diurnal changes in the micro-scale depth distribution of chlorophylls a and b and colloidal carbohydrate. In addition, because macrofauna can alter sediment properties, diurnal changes in the macrofaunal assemblages were investigated. The microphytobenthos at the study sites were predominantly filamentous green algae, although diatoms were present. Samples for biochemical analysis were collected from the top 2 mm of sediment using mini-cryolanders, during low tide in the day and at night. Three biochemical properties of the sediments were measured spectrophotometrically: chlorophylls a and b (surrogate for microphytobenthos biomass) and colloidal carbohydrate. The amount of chlorophylls tended to be less at night than during the day, but site to site variability was large and these differences were generally small and not significant. Depth profiles indicated that there was some redistribution of pigments in the surface 2 mm between day and night, possibly due to migration of microphytobenthos or physiological changes. There was no significant difference in chlorophylls between the mangrove forest and adjacent mudflat, with the exception of chlorophyll b at one sampling time, which was larger in the mangrove forest than on the mudflat. Colloidal carbohydrate was significantly larger in the mangrove forest and significantly less on the mudflat during the day at one site at one time, but otherwise showed no significant differences between day and night or between the mangrove forest and mudflat. Whilst there were some differences in the benthic macrofaunal assemblages between day and night, these differences were only significant for spionids and polychaetes at one time. There were, however, significant differences in assemblages of benthic macrofauna between the mangrove forest and mudflat, probably due to structural differences between these habitats such as the presence of pneumatophores, shade and leaf litter. In summary, there was some minor diurnal variation in the measured biochemical properties of the sediment, but not in the macrofaunal assemblage. Diurnal changes should, therefore, be considered when investigating biochemical properties in these habitats, but they are not a major influence. These findings contrast to previous studies on diatom dominated mudflats in Europe, where stronger diurnal changes in biochemical properties were found. Diurnal changes in the macrofauna assemblages were largely insignificant and therefore could not explain the changes in the biochemical properties. Diurnal effects on the macrofauna in these habitats are more likely to be via altered behaviours and this requires further investigation