Seasonal niche of planktonic prokaryotes inhabiting surface waters of the upwelling region off NW Iberia

Prokaryotes play an important role in biogeochemical cycling in marine ecosystems, but little is known about their diversity and composition, and it’s even less understood how they may contribute to the ecological functioning of highly variable coastal areas affected by upwelling. Between May 2016 and May 2018, we carried out 26 one-day samplings in the temperate northwestern Iberian upwelling system to investigate the temporal patterns of variability for prokaryotic abundance, diversity and community composition by combining flow cytometry and 16S RNA high- throughput sequencing. A marked seasonality was found for prokaryotic abundance, peaking during summer upwelling and relaxation season (≈May to September), when extracellular release of organic matter from phytoplanktonic blooms is a significant process, and decreasing in downwelling events (≈October to April). Those downwelling conditions, characterized by deeper mixed layers and a homogeneous water column, favored a higher abundance of the archaeal groups, Marine Group II (Euryarchaeota) and Nitrosopelagicus (Thaumarchaeota), as well as of Marinimicrobia bacterium (SAR406 clade) and the group Bacteria_Others. By contrast, upwelling and relaxation conditions characterized by enhanced vertical stratification and hydrographic variability, included a community generally less diverse with core-phylotypes (occurring > 75% of the samples) proliferating, i.e. Flavobacteriaceae (Bacteroidetes), Chloroplast (Cyanobacteria) and Amylibacter (Proteobacteria). Overall, the environmental conditions explained 60% (R2=0.60, AIC=125.64) of the prokaryotic community composition, being temperature, inorganic nutrients, chlorophyll and particulate organic nitrogen the variables that best explained the variation in the prokaryotic community composition (r=0.40). Additional efforts are currently underway on a fine-tuning composition assessment (oligotypes composition from particular core-phylotypes) to study if this variability along the temporal environmental gradient could be associated with the differentiation of ecotypes (oligotype ́s seasonality within particular phylotypes). Overall, the present study provides new insights into the barely explored seasonal niche partitioning of surface prokaryotic community driven by hydrodynamic forcing in an upwelling system, which may support further investigations on the role of bacterioplankton in the biogeochemistry of these ecosystems

Seasonal niche of planktonic prokaryotes inhabiting surface waters of the upwelling region off NW Iberia

Oral communicationProkaryotes play an important role in biogeochemical cycling in marine ecosystems, but little is known about their diversity and composition, and it’s even less understood how they may contribute to the ecological functioning of highly variable coastal areas affected by upwelling. Between May 2016 and May 2018, we carried out 26 one-day samplings in the temperate northwestern Iberian upwelling system to investigate the temporal patterns of variability for prokaryotic abundance, diversity and community composition by combining flow cytometry and 16S RNA high- throughput sequencing. A marked seasonality was found for prokaryotic abundance, peaking during summer upwelling and relaxation season (≈May to September), when extracellular release of organic matter from phytoplanktonic blooms is a significant process, and decreasing in downwelling events (≈October to April). Those downwelling conditions, characterized by deeper mixed layers and a homogeneous water column, favored a higher abundance of the archaeal groups, Marine Group II (Euryarchaeota) and Nitrosopelagicus (Thaumarchaeota), as well as of Marinimicrobia bacterium (SAR406 clade) and the group Bacteria_Others. By contrast, upwelling and relaxation conditions characterized by enhanced vertical stratification and hydrographic variability, included a community generally less diverse with core-phylotypes (occurring > 75% of the samples) proliferating, i.e. Flavobacteriaceae (Bacteroidetes), Chloroplast (

Bacterial community composition and optical signature of DOM shape empirical leucine-to-carbon conversion factors in north-eastern Atlantic waters (0-4000 m)

Oral communicationMicrobial heterotrophic activity is a major process regulating the flux of dissolved organic matter (DOM) in the ocean. DOM quantity and quality strongly influence its microbial utilization and fate in the ocean. In order to broaden the vertical resolution of leucine-to-carbon conversion factors (CFs), needed for converting substrate incorporation into biomass production by heterotrophic bacteria, nine dilution experiments were performed in the north Atlantic. We found a very consistent depth-stratification in empirical CFs values from epipelagic to bathypelagic waters (3.95 ± 0.05 to 0.90 ± 0.51 kg C mol Leu-1). Our results demonstrated that the customarily used CF of 1.55 kg C mol Leu-1 in oceanic waters leads to an underestimation of prokaryotic heterotrophic production in epi- and mesopelagic waters, while it causes a severe overestimation in bathypelagic waters. Pearson correlations showed that CFs were related not only to hydrographic variables but also to specific phylogenetic groups and DOM quality and quantity indicators. Furthermore, a multiple linear regression model predicting CFs from relatively simple hydrographic and optical spectroscopic measurements is provided. Taken together, our results suggest that differences in CFs throughout the water column might be mostly associated to the quality of DOM affecting the response of particular phylogenetic groups.ASL

Molecular characterization of dissolved organic matter linked to microbial (Bacteria and Archaea) diversity in the main water masses of the Eastern North Atlantic Ocean

The microbe-dissolved organic matter (DOM) interactions include microbial uptake and DOM reworking and release, affecting the composition of the heterogeneous DOM pool. In turns, this distinct DOM composition can select for microbial assemblages. We investigated the diversity of microbial (both Bacteria and Archaea) communities (combining Illumina tag sequencing of 16S rRNA gen -amplicon sequencing variants, ASVs- and metagenomics) and the chemodiversity of dissolved organic molecules (extracted by solid phase extraction and analyzed by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, FT-ICR-MS) in the Eastern North Atlantic Ocean off the Galician coast (43oN, 9o-15oW). Sampling ranged from 100 m to 5000 m, thereby encompassing a wide variety of water masses with contrasting origins and different aging. Applying diversity ecological metrics to both organic compounds and ASVs, we found that microbial diversity and richness were negatively correlated with DOM concentration and chemo-diversity. Besides, our results demonstrated the link between this trend and water mass aging, which enhances biosphere taxonomic diversity but reduces molecular variety. DOM diversity, decreasing along the water mass aging gradient, would likely reflect the persistence of the most refractory molecules, generated as by- product of the DOM degradation by microbes. In two PCoAs based on the metagenomic data, combined PCoA axis 1 and PCoA axis 2, explained the 80% and 20% of the microbial gene ́s structural variability among water masses. The oldest water masses, originated at high latitudes, such as NADW and LDW, were associated to higher abundance of genes involved in metabolism of aromatic compound. Intermediate waters such as ENACWst were related to sulphur/iron/phosphorous metabolism related genes. Surface waters were linked to genes involved in photosynthesis, autotrophy and cell division. Taken together, the observed increase of DOM homogenization along water mass aging was associated to differences in the functional diversity of microbial communities

Molecular characterization of dissolved organic matter linked to microbial (Bacteria and Archaea) diversity in the main water masses of the Eastern North Atlantic Ocean

Oral communicationThe microbe-dissolved organic matter (DOM) interactions include microbial uptake and DOM reworking and release, affecting the composition of the heterogeneous DOM pool. In turns, this distinct DOM composition can select for microbial assemblages. We investigated the diversity of microbial (both Bacteria and Archaea) communities (combining Illumina tag sequencing of 16S rRNA gen -amplicon sequencing variants, ASVs- and metagenomics) and the chemodiversity of dissolved organic molecules (extracted by solid phase extraction and analyzed by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, FT-ICR-MS) in the Eastern North Atlantic Ocean off the Galician coast (43oN, 9o-15oW). Sampling ranged from 100 m to 5000 m, thereby encompassing a wide variety of water masses with contrasting origins and different aging. Applying diversity ecological metrics to both organic compounds and ASVs, we found that microbial diversity and richness were negatively correlated with DOM concentration and chemo-diversity. Besides, our results demonstrated the link between this trend and water mass aging, which enhances biosphere taxonomic diversity but reduces molecular variety. DOM diversity, decreasing along the water mass aging gradient, would likely reflect the persistence of the most refractory molecules, generated as by- product of the DOM degradation by microbes. In two PCoAs based on the metagenomic data, combined PCoA axis 1 and PCoA axis 2, explained the 80% and 20% of the microbial gene ́s structural variability among water masses. The oldest water masses, originated at high latitudes, such as NADW and LDW, were associated to higher abundance of genes involved in metabolism of aromatic compound. Intermediate waters such as ENACWst were related to sulphur/iron/phosphorous metabolism-related genes. Surface waters were linked to genes involved in photosynthesis, autotrophy and cell division. Taken together, the observed increase of DOM homogenization along water mass aging was associated to differences in the functional diversity of microbial communitie