Recent Developments in the Lorentz Integral Transform (LIT) Method

Recent results on electromagnetic reactions into the continuum of systems with A from 3 to 7 are presented. They have been obtained using the Lorentz Integral Transform (LIT) method. The method is shortly reviewed, emphasizing how all the results, though obtained with the sole ingredient of the N-N potential, contain the full complicated dynamics of the A-body system, both in the initial and in the final states.Comment: 7 pages, 6 figures, Proc. XIX European Few-Body Conf., Groningen, Aug. 23-27, 200

Gaussian Sum-Rule Analysis of Scalar Gluonium and Quark Mesons

Gaussian sum-rules, which are related to a two-parameter Gaussian-weighted integral of a hadronic spectral function, are able to examine the possibility that more than one resonance makes a significant contribution to the spectral function. The Gaussian sum-rules, including instanton effects, for scalar gluonic and non-strange scalar quark currents clearly indicate a distribution of the resonance strength in their respective spectral functions. Furthermore, analysis of a two narrow resonance model leads to excellent agreement between theory and phenomenology in both channels. The scalar quark and gluonic sum-rules are remarkably consistent in their prediction of masses of approximately 1.0 GeV and 1.4 GeV within this model. Such a similarity would be expected from hadronic states which are mixtures of gluonium and quark mesons.Comment: latex2e using amsmath, 11 pages, 4 eps figures embedded in latex file. Write-up of presentation for the 2003 SUNY IT (Utica) workshop on scalar meson

Facilitated diffusion on confined DNA

In living cells, proteins combine 3D bulk diffusion and 1D sliding along the DNA to reach a target faster. This process is known as facilitated diffusion, and we investigate its dynamics in the physiologically relevant case of confined DNA. The confining geometry and DNA elasticity are key parameters: we find that facilitated diffusion is most efficient inside an isotropic volume, and on a flexible polymer. By considering the typical copy numbers of proteins in vivo, we show that the speedup due to sliding becomes insensitive to fine tuning of parameters, rendering facilitated diffusion a robust mechanism to speed up intracellular diffusion-limited reactions. The parameter range we focus on is relevant for in vitro systems and for facilitated diffusion on yeast chromatin

Spinodal decomposition to a lamellar phase: effects of hydrodynamic flow

Results are presented for the kinetics of domain growth of a two-dimensional fluid quenched from a disordered to a lamellar phase. At early times when a Lifshitz-Slyozov mechanism is operative the growth process proceeds logarithmically in time to a frozen state with locked-in defects. However when hydrodynamic modes become important, or the fluid is subjected to shear, the frustration of the system is alleviated and the size and orientation of the lamellae attain their equilibrium values.Comment: 4 Revtex pages, 4 figures, to appear in Physical Review Letter

Interplay between writhe and knotting for swollen and compact polymers

The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo methods to investigate the interplay between writhe and knotting of ring polymers in good and poor solvents. The model that we consider is interacting self-avoiding polygons on the simple cubic lattice. For polygons with fixed knot type we find a writhe distribution whose average depends on the knot type but is insensitive to the length $N$ of the polygon and to solvent conditions. This "topological contribution" to the writhe distribution has a value that is consistent with that of ideal knots. The standard deviation of the writhe increases approximately as $\sqrt{N}$ in both regimes and this constitutes a geometrical contribution to the writhe. If the sum over all knot types is considered, the scaling of the standard deviation changes, for compact polygons, to $\sim N^{0.6}$. We argue that this difference between the two regimes can be ascribed to the topological contribution to the writhe that, for compact chains, overwhelms the geometrical one thanks to the presence of a large population of complex knots at relatively small values of $N$. For polygons with fixed writhe we find that the knot distribution depends on the chosen writhe, with the occurrence of achiral knots being considerably suppressed for large writhe. In general, the occurrence of a given knot thus depends on a nontrivial interplay between writhe, chain length, and solvent conditions.Comment: 10 pages, accepted in J.Chem.Phy

Switching dynamics in cholesteric blue phases

Blue phases are networks of disclination lines, which occur in cholesteric liquid crystals near the transition to the isotropic phase. They have recently been used for the new generation of fast switching liquid crystal displays. Here we study numerically the steady states and switching hydrodynamics of blue phase I (BPI) and blue phase II (BPII) cells subjected to an electric field. When the field is on, there are three regimes: for very weak fields (and strong anchoring at the boundaries) the blue phases are almost unaffected, for intermediate fields the disclinations twist (for BPI) and unzip (for BPII), whereas for very large voltages the network dissolves in the bulk of the cell. Interestingly, we find that a BPII cell can recover its original structure when the field is switched off, whereas a BPI cell is found to be trapped more easily into metastable configurations. The kinetic pathways followed during switching on and off entails dramatic reorganisation of the disclination networks. We also discuss the effect of changing the director field anchoring at the boundary planes and of varying the direction of the applied field.Comment: 17 pages, 11 figure