Evaluating diversity among Kenyan papaya germplasm using simple sequence repeat markers

Papaya is an important fruit crop, produced in Kenya for local consumption and export. Despite a history of varietal introductions, no attempts concerned on developing varieties suited to Kenyan conditions have been documented. The objective of this study was to provide information on the diversity of germplasm available in Kenya, as a precursor to systematic plant breeding program. Forty two papaya accessions were collected from farmers’ fields located in Coast, Rift Valley, Western, Nyanza, Central and Eastern provinces. Genetic diversity was determined using seven simple sequence repeat (SSR) markers, computing allelic richness and frequency, expected heterozygosity and cluster analysis. Results indicated that themarkers were highly polymorphic among the accessions, with polymorphicinformation content (PIC) varying from 0.75 to 0.852 with an average of 0.81. The genetic similarity among the 42 papaya accessions ranged from 0.764 to 0.932 with an average of 0.844 showing that most papaya accessions used in this study were closely related. About 96.9% of the pair-wise comparisons among papaya accessions exhibited genetic similarity greater than 0.802, while less than 4% (3.1%) showed genetic similarity lower than 0.802. The phylogenetic analysis grouped the 42accessions into two main clusters A and B. Cluster A had four sub-clusters while cluster B had one cluster. Accessions from Coast, and some from Rift Valley Provinces, presented the highest variation, being scattered throughout the tree, with little or no differentiation from most accessions, whereas some accessions from Coast regrouped in clusters A (iv) and B. The genetic differences among the accessions revealed by the formation of distinct clusters suggest significant genetic variability emanation from varying sources of the papaya germplasm in Kenya. Although the level of genetic diversity revealed by SSR markers in this study is sufficient todistinguish between breeding lines for varietal protection, the rather narrow genetic diversity demonstrated indicates the need to introduce new germplasm or use other techniques such as mutation and genetic engineering to provide breeding materials for the future improvement of papaya in Kenya.Key words: Kenya, papaya, genetic diversity

Morphological diversity of Kenyan papaya germplasm

Papaya is one of the major fruit crops of the tropical regions of the world. It shows considerable phenotypic variation in morphological and horticultural traits that can be utilized in its genetic improvement. In Kenya, wide range of papaya germplasm exists and has not been characterized. Therefore, there is difficulty in differentiating the papaya accessions in the different regions of Kenya. Characterization of papaya germplasm is normally accomplished by use of morphological descriptors, hence as a first step, a germplasm collection from within Kenya was gathered and its morphological diversity was assessed. The papaya germplasm was collected from Coast, Nyanza, Western, Rift Valley, Eastern and Central provinces of Kenya and characterized in the field using morphological descriptors based on fruit, flower, stem and leaf characteristics. The morphological characters were recorded andmorphological data from sixty accessions were submitted to principal component and Neighbor- Joining cluster analysis. Accessions from Coastal, Western, Rift Valley and Nyanza provinces showed the widest morphological diversity with those from Eastern and Central provinces showing the least diversity. Fruit shape, fruit diameter, tree habit, leaf size and flower color showed the greatest variation in principal component analysis. The high diversity observed within the accessions points to ample possibilities of obtaining desirable trait combinations in specific cultivars.Keywords: Kenya, papaya, germplasm, morphological characterizatio