Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells-5

) of two different samples on Affymetrix (a) and Illumina (b) platforms. The blue line on each plot represents a regression line that best fits the plotted set of points. Both array types provide high inter-replicates reproducibility of the relative gene expression intensities.<p><b>Copyright information:</b></p><p>Taken from "Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells"</p><p>http://www.biomedcentral.com/1471-2164/9/302</p><p>BMC Genomics 2008;9():302-302.</p><p>Published online 25 Jun 2008</p><p>PMCID:PMC2464609.</p><p></p

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells-4

Examined; Genes present in the top-left and bottom right quarters of each plots show changes in opposite direction. These genes are expected to overlap by chance.<p><b>Copyright information:</b></p><p>Taken from "Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells"</p><p>http://www.biomedcentral.com/1471-2164/9/302</p><p>BMC Genomics 2008;9():302-302.</p><p>Published online 25 Jun 2008</p><p>PMCID:PMC2464609.</p><p></p

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells-0

) of two different samples on Affymetrix (a) and Illumina (b) platforms. The blue line on each plot represents a regression line that best fits the plotted set of points. Both array types provide high inter-replicates reproducibility of the relative gene expression intensities.<p><b>Copyright information:</b></p><p>Taken from "Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells"</p><p>http://www.biomedcentral.com/1471-2164/9/302</p><p>BMC Genomics 2008;9():302-302.</p><p>Published online 25 Jun 2008</p><p>PMCID:PMC2464609.</p><p></p

Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells-3

He list was constituted by selecting DEG (Pc < 0.05), then within this list genes were ranked according to decreasing fold change. The number of overlapping genes between lists was calculated for increasing list size. When the number of probes in the lists was approximately 3800, the number of overlapping genes reached a plateau. The "best 3800" set of probes was defined accordingly.<p><b>Copyright information:</b></p><p>Taken from "Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells"</p><p>http://www.biomedcentral.com/1471-2164/9/302</p><p>BMC Genomics 2008;9():302-302.</p><p>Published online 25 Jun 2008</p><p>PMCID:PMC2464609.</p><p></p