Magnetic reconnection during collisionless, stressed, X-point collapse using Particle-in-Cell simulation

Two cases of weakly and strongly stressed X-point collapse were considered. Here descriptors weakly and strongly refer to 20 % and 124 % unidirectional spatial compression of the X-point, respectively. In the weakly stressed case, the reconnection rate, defined as the out-of-plane electric field in the X-point (the magnetic null) normalised by the product of external magnetic field and Alfv\'en speeds, peaks at 0.11, with its average over 1.25 Alfv\'en times being 0.04. Electron energy distribution in the current sheet, at the high energy end of the spectrum, shows a power law distribution with the index varying in time, attaining a maximal value of -4.1 at the final simulation time step (1.25 Alfv\'en times). In the strongly stressed case, magnetic reconnection peak occurs 3.4 times faster and is more efficient. The peak reconnection rate now attains value 2.5, with the average reconnection rate over 1.25 Alfv\'en times being 0.5. The power law energy spectrum for the electrons in the current sheet attains now a steeper index of -5.5, a value close to the ones observed in the vicinity of X-type region in the Earth's magneto-tail. Within about one Alfv\'en time, 2% and 20% of the initial magnteic energy is converted into heat and accelerated particle energy in the case of weak and strong stress, respectively. In the both cases, during the peak of the reconnection, the quadruple out-of-plane magnetic field is generated, hinting possibly to the Hall regime of the reconnection. These results strongly suggest the importance of the collionless, stressed X-point collapse as a possible contributing factor to the solution of the solar coronal heating problem or more generally, as an efficient mechanism of converting magnetic energy into heat and super-thermal particle energy.Comment: Final Accepted Version (Physics of Plasmas in Press 2007

Dynamic Provenance for SPARQL Update

While the Semantic Web currently can exhibit provenance information by using the W3C PROV standards, there is a "missing link" in connecting PROV to storing and querying for dynamic changes to RDF graphs using SPARQL. Solving this problem would be required for such clear use-cases as the creation of version control systems for RDF. While some provenance models and annotation techniques for storing and querying provenance data originally developed with databases or workflows in mind transfer readily to RDF and SPARQL, these techniques do not readily adapt to describing changes in dynamic RDF datasets over time. In this paper we explore how to adapt the dynamic copy-paste provenance model of Buneman et al. [2] to RDF datasets that change over time in response to SPARQL updates, how to represent the resulting provenance records themselves as RDF in a manner compatible with W3C PROV, and how the provenance information can be defined by reinterpreting SPARQL updates. The primary contribution of this paper is a semantic framework that enables the semantics of SPARQL Update to be used as the basis for a 'cut-and-paste' provenance model in a principled manner.Comment: Pre-publication version of ISWC 2014 pape

Mode-coupling and nonlinear Landau damping effects in auroral Farley-Buneman turbulence

The fundamental problem of Farley-Buneman turbulence in the auroral $E$-region has been discussed and debated extensively in the past two decades. In the present paper we intend to clarify the different steps that the auroral $E$-region plasma has to undergo before reaching a steady state. The mode-coupling calculation, for Farley-Buneman turbulence, is developed in order to place it in perspective and to estimate its magnitude relative to the anomalous effects which arise through the nonlinear wave-particle interaction. This nonlinear effect, known as nonlinear ``Landau damping'' is due to the coupling of waves which produces other waves which in turn lose energy to the bulk of the particles by Landau damping. This leads to a decay of the wave energy and consequently a heating of the plasma. An equation governing the evolution of the field spectrum is derived and a physical interpration for each of its terms is provided

Particle-in-cell simulations of shock-driven reconnection in relativistic striped winds

By means of two- and three-dimensional particle-in-cell simulations, we investigate the process of driven magnetic reconnection at the termination shock of relativistic striped flows. In pulsar winds and in magnetar-powered relativistic jets, the flow consists of stripes of alternating magnetic field polarity, separated by current sheets of hot plasma. At the wind termination shock, the flow compresses and the alternating fields annihilate by driven magnetic reconnection. Irrespective of the stripe wavelength "lambda" or the wind magnetization "sigma" (in the regime sigma>>1 of magnetically-dominated flows), shock-driven reconnection transfers all the magnetic energy of alternating fields to the particles, whose average Lorentz factor increases by a factor of sigma with respect to the pre-shock value. In the limit lambda/(r_L*sigma)>>1, where r_L is the relativistic Larmor radius in the wind, the post-shock particle spectrum approaches a flat power-law tail with slope around -1.5, populated by particles accelerated by the reconnection electric field. The presence of a current-aligned "guide" magnetic field suppresses the acceleration of particles only when the guide field is stronger than the alternating component. Our findings place important constraints on the models of non-thermal radiation from Pulsar Wind Nebulae and relativistic jets.Comment: 25 pages, 14 figures, movies available at https://www.cfa.harvard.edu/~lsironi/sironi_movies.tar ; in press, special issue of Computational Science and Discovery on selected research from the 22nd International Conference on Numerical Simulation of Plasma

Ultrametric spaces of branches on arborescent singularities

Let $S$ be a normal complex analytic surface singularity. We say that $S$ is arborescent if the dual graph of any resolution of it is a tree. Whenever $A,B$ are distinct branches on $S$, we denote by $A \cdot B$ their intersection number in the sense of Mumford. If $L$ is a fixed branch, we define $U_L(A,B)= (L \cdot A)(L \cdot B)(A \cdot B)^{-1}$ when $A \neq B$ and $U_L(A,A) =0$ otherwise. We generalize a theorem of P{\l}oski concerning smooth germs of surfaces, by proving that whenever $S$ is arborescent, then $U_L$ is an ultrametric on the set of branches of $S$ different from $L$. We compute the maximum of $U_L$, which gives an analog of a theorem of Teissier. We show that $U_L$ encodes topological information about the structure of the embedded resolutions of any finite set of branches. This generalizes a theorem of Favre and Jonsson concerning the case when both $S$ and $L$ are smooth. We generalize also from smooth germs to arbitrary arborescent ones their valuative interpretation of the dual trees of the resolutions of $S$. Our proofs are based in an essential way on a determinantal identity of Eisenbud and Neumann.Comment: 37 pages, 16 figures. Compared to the first version on Arxiv, il has a new section 4.3, accompanied by 2 new figures. Several passages were clarified and the typos discovered in the meantime were correcte

The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands

The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, http://www.guidetopharmacology.org) provides expert-curated molecular interactions between successful and potential drugs and their targets in the human genome. Developed by the International Union of Basic and Clinical Pharmacology (IUPHAR) and the British Pharmacological Society (BPS), this resource, and its earlier incarnation as IUPHAR-DB, is described in our 2014 publication. This update incorporates changes over the intervening seven database releases. The unique model of content capture is based on established and new target class subcommittees collaborating with in-house curators. Most information comes from journal articles, but we now also index kinase cross-screening panels. Targets are specified by UniProtKB IDs. Small molecules are defined by PubChem Compound Identifiers (CIDs); ligand capture also includes peptides and clinical antibodies. We have extended the capture of ligands and targets linked via published quantitative binding data (e.g. Ki, IC50 or Kd). The resulting pharmacological relationship network now defines a data-supported druggable genome encompassing 7% of human proteins. The database also provides an expanded substrate for the biennially published compendium, the Concise Guide to PHARMACOLOGY. This article covers content increase, entity analysis, revised curation strategies, new website features and expanded download options

Dynamical stability of infinite homogeneous self-gravitating systems: application of the Nyquist method

We complete classical investigations concerning the dynamical stability of an infinite homogeneous gaseous medium described by the Euler-Poisson system or an infinite homogeneous stellar system described by the Vlasov-Poisson system (Jeans problem). To determine the stability of an infinite homogeneous stellar system with respect to a perturbation of wavenumber k, we apply the Nyquist method. We first consider the case of single-humped distributions and show that, for infinite homogeneous systems, the onset of instability is the same in a stellar system and in the corresponding barotropic gas, contrary to the case of inhomogeneous systems. We show that this result is true for any symmetric single-humped velocity distribution, not only for the Maxwellian. If we specialize on isothermal and polytropic distributions, analytical expressions for the growth rate, damping rate and pulsation period of the perturbation can be given. Then, we consider the Vlasov stability of symmetric and asymmetric double-humped distributions (two-stream stellar systems) and determine the stability diagrams depending on the degree of asymmetry. We compare these results with the Euler stability of two self-gravitating gaseous streams. Finally, we determine the corresponding stability diagrams in the case of plasmas and compare the results with self-gravitating systems

An introduction to Graph Data Management

A graph database is a database where the data structures for the schema and/or instances are modeled as a (labeled)(directed) graph or generalizations of it, and where querying is expressed by graph-oriented operations and type constructors. In this article we present the basic notions of graph databases, give an historical overview of its main development, and study the main current systems that implement them