2 research outputs found
Exploiting Human Memory B Cell Heterogeneity for Improved Vaccine Efficacy
The major goal in vaccination is establishment of long-term, prophylactic humoral memory to a pathogen. Two major components to long-lived humoral memory are plasma cells for the production of specific immunoglobulin and memory B cells that survey for their specific antigen in the periphery for later affinity maturation, proliferation, and differentiation. The study of human B cell memory has been aided by the discovery of a general marker for B cell memory, expression of CD27; however, new data suggests the existence of CD27− memory B cells as well. These recently described non-canonical memory populations have increasingly pointed to the heterogeneity of the memory compartment. The novel B memory subsets in humans appear to have unique origins, localization, and functions compared to what was considered to be a “classical” memory B cell. In this article, we review the known B cell memory subsets, the establishment of B cell memory in vaccination and infection, and how understanding these newly described subsets can inform vaccine design and disease treatment
Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1
0.13.1 (May 20, 2017)
FIX: Make release compatible with conda-forge build process (https://github.com/nipy/nipype/pull/2017)
ENH: Update some minimum versions in compliance with Debian Jessie (https://github.com/nipy/nipype/pull/2017)
ENH: Circle builds use cached docker layers (https://github.com/nipy/nipype/pull/2017)
ENH: Base docker to use FS6 and ANTS 2.2.0 (https://github.com/nipy/nipype/pull/2024)
FIX: Mailmap and contributor acknowledgment (https://github.com/nipy/nipype/pull/2017)
FIX: Preserve node properties in sub nodes of MapNode (https://github.com/nipy/nipype/pull/2019)
FIX: Fix interfaces 3DUnifize, ICA_AROMA, BinaryMaths, RegAverage, BBRegister, AffineInitializer (https://github.com/nipy/nipype/pull/2025, https://github.com/nipy/nipype/pull/2027, https://github.com/nipy/nipype/pull/2036, https://github.com/nipy/nipype/pull/2037, https://github.com/nipy/nipype/pull/2031, https://github.com/nipy/nipype/pull/2010)
ENH: Add Anisotropic Power interface (https://github.com/nipy/nipype/pull/2039)
FIX: Bayesian estimation in SPM (https://github.com/nipy/nipype/pull/2030)
0.13.0 (May 11, 2017)
ENH: Multi-stage recon-all directives (https://github.com/nipy/nipype/pull/1991)
FIX: FEAT "folder does not exist" error (https://github.com/nipy/nipype/pull/2000)
ENH: Niftyfit interfaces (https://github.com/nipy/nipype/pull/1910)
FIX: Define ANTSPATH for BrainExtraction automatically (https://github.com/nipy/nipype/pull/1986)
ENH: New trait for imaging files (https://github.com/nipy/nipype/pull/1949)
ENH: Niftyseg interfaces (https://github.com/nipy/nipype/pull/1911)
ENH: Niftyreg interfaces (https://github.com/nipy/nipype/pull/1913)
MRG: Allow more support for CLI (https://github.com/nipy/nipype/pull/1908)
ENH: 3dQwarpPlusMinus interface (https://github.com/nipy/nipype/pull/1974)
FIX: PY3.6 support (https://github.com/nipy/nipype/pull/1977)
FIX: PY3 and stream fixes for MRTrix2TrackVis (https://github.com/nipy/nipype/pull/1804)
ENH: More mask options for CompCor interfaces (https://github.com/nipy/nipype/pull/1968 + https://github.com/nipy/nipype/pull/1992)
ENH: Additional TOPUP outputs (https://github.com/nipy/nipype/pull/1976)
ENH: Additional Eddy flags (https://github.com/nipy/nipype/pull/1967)
ENH: ReconAll handlers for less common cases (https://github.com/nipy/nipype/pull/1966)
ENH: FreeSurferSource now finds graymid/midthickness surfs (https://github.com/nipy/nipype/pull/1972)
ENH: Additional fslmaths dimensional reduction operations (https://github.com/nipy/nipype/pull/1956)
ENH: More options for RobustFOV interface (https://github.com/nipy/nipype/pull/1923)
ENH: Add MRIsCombine to FreeSurfer utils (https://github.com/nipy/nipype/pull/1948)
FIX: Level1Design EV parameter substitution (https://github.com/nipy/nipype/pull/1953)
FIX: Dcm2niix outputs can be uncompressed (https://github.com/nipy/nipype/pull/1951)
FIX: Ensure build fails in Circle when tests fail (https://github.com/nipy/nipype/pull/1981)
ENH: Add interface to antsAffineInitializer (https://github.com/nipy/nipype/pull/1980)
ENH: AFNI motion parameter support for FrameWiseDisplacement (https://github.com/nipy/nipype/pull/1840)
ENH: Add ANTs KellyKapowski interface (https://github.com/nipy/nipype/pull/1845)
FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (https://github.com/nipy/nipype/pull/1728)
FIX: Select Eddy run command at runtime (https://github.com/nipy/nipype/pull/1871)
FIX: Increase FLIRT's flexibility with apply_xfm (https://github.com/nipy/nipype/pull/1875)
DOC: Update FSL preprocess docstrings (https://github.com/nipy/nipype/pull/1881)
ENH: Support GIFTI outputs in SampleToSurface (https://github.com/nipy/nipype/pull/1886)
FIX: Configparser differences between PY2 and PY3 (https://github.com/nipy/nipype/pull/1890)
ENH: Add mris_expand interface (https://github.com/nipy/nipype/pull/1893)
FIX: Split over-eager globs in FreeSurferSource (https://github.com/nipy/nipype/pull/1894)
FIX: Store undefined by default so that xor checks don't trip (https://github.com/nipy/nipype/pull/1903)
FIX: Gantt chart generator PY3 compatibility (https://github.com/nipy/nipype/pull/1907)
FIX: Add DOF and --fsl-dof options to BBRegister (https://github.com/nipy/nipype/pull/1917)
ENH: Auto-derive input_names in Function (https://github.com/nipy/nipype/pull/1918)
FIX: Minor fixes for NonSteadyStateDetector (https://github.com/nipy/nipype/pull/1926)
DOC: Add duecredit references for AFNI and FSL (https://github.com/nipy/nipype/pull/1930)
ENH: Added zenodo (https://zenodo.org/) file (https://github.com/nipy/nipype/pull/1924)
ENH: Disable symlinks on CIFS filesystems (https://github.com/nipy/nipype/pull/1941)
ENH: Sphinx extension to plot workflows (https://github.com/nipy/nipype/pull/1896)
ENH: Added non-steady state detector for EPI data (https://github.com/nipy/nipype/pull/1839)
ENH: Enable new BBRegister init options for FSv6+ (https://github.com/nipy/nipype/pull/1811)
REF: Splits nipype.interfaces.utility into base, csv, and wrappers (https://github.com/nipy/nipype/pull/1828)
FIX: Makespec now runs with nipype in current directory (https://github.com/nipy/nipype/pull/1813)
FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (https://github.com/nipy/nipype/pull/1796 + https://github.com/nipy/nipype/pull/1831)
ENH: DVARS includes intensity normalization feature - turned on by default (https://github.com/nipy/nipype/pull/1827)
FIX: DVARS is correctly using sum of squares instead of standard deviation (https://github.com/nipy/nipype/pull/1827)
ENH: Refactoring of nipype.interfaces.utility (https://github.com/nipy/nipype/pull/1828)
FIX: CircleCI were failing silently. Some fixes to tests (https://github.com/nipy/nipype/pull/1833)
FIX: Issues in Docker image permissions, and docker documentation (https://github.com/nipy/nipype/pull/1825)
ENH: Revised all Dockerfiles and automated deployment to Docker Hub from CircleCI (https://github.com/nipy/nipype/pull/1815)
ENH: Update ReconAll interface for FreeSurfer v6.0.0 (https://github.com/nipy/nipype/pull/1790)
FIX: Cast DVARS float outputs to avoid memmap error (https://github.com/nipy/nipype/pull/1777)
FIX: FSL FNIRT intensity mapping files (https://github.com/nipy/nipype/pull/1799)
ENH: Additional outputs generated by FSL EDDY (https://github.com/nipy/nipype/pull/1793)
TST: Parallelize CircleCI build across 4 containers (https://github.com/nipy/nipype/pull/1769)
0.13.0-rc1 (January 4, 2017)
FIX: Compatibility with traits 4.6 (https://github.com/nipy/nipype/pull/1770)
FIX: Multiproc deadlock (https://github.com/nipy/nipype/pull/1756)
TST: Replace nose and unittest with pytest (https://github.com/nipy/nipype/pull/1722, https://github.com/nipy/nipype/pull/1751)
FIX: Semaphore capture using MultiProc plugin (https://github.com/nipy/nipype/pull/1689)
REF: Refactor AFNI interfaces (https://github.com/nipy/nipype/pull/1678, https://github.com/nipy/nipype/pull/1680)
ENH: Move nipype commands to group command using click (https://github.com/nipy/nipype/pull/1608)
FIX: AFNI Retroicor interface fixes (https://github.com/nipy/nipype/pull/1669)
FIX: Minor errors after migration to setuptools (https://github.com/nipy/nipype/pull/1671)
ENH: Add AFNI 3dNote interface (https://github.com/nipy/nipype/pull/1637)
ENH: Abandon distutils, only use setuptools (https://github.com/nipy/nipype/pull/1627)
FIX: Minor bugfixes related to unicode literals (https://github.com/nipy/nipype/pull/1656)
TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files)
ENH: Add signal extraction interface (https://github.com/nipy/nipype/pull/1647)
ENH: Add a DVARS calculation interface (https://github.com/nipy/nipype/pull/1606)
ENH: New interface to b0calc of FSL-POSSUM (https://github.com/nipy/nipype/pull/1399)
ENH: Add CompCor (https://github.com/nipy/nipype/pull/1599)
ENH: Add duecredit entries (https://github.com/nipy/nipype/pull/1466)
FIX: Python 3 compatibility fixes (https://github.com/nipy/nipype/pull/1572)
REF: Improved PEP8 compliance for fsl interfaces (https://github.com/nipy/nipype/pull/1597)
REF: Improved PEP8 compliance for spm interfaces (https://github.com/nipy/nipype/pull/1593)
TST: Replaced coveralls with codecov (https://github.com/nipy/nipype/pull/1609)
ENH: More BrainSuite interfaces (https://github.com/nipy/nipype/pull/1554)
ENH: Convenient load/save of interface inputs (https://github.com/nipy/nipype/pull/1591)
ENH: Add a Framewise Displacement calculation interface (https://github.com/nipy/nipype/pull/1604)
FIX: Use builtins open and unicode literals for py3 compatibility (https://github.com/nipy/nipype/pull/1572)
TST: reduce the size of docker images & use tags for images (https://github.com/nipy/nipype/pull/1564)
ENH: Implement missing inputs/outputs in FSL AvScale (https://github.com/nipy/nipype/pull/1563)
FIX: Fix symlink test in copyfile (https://github.com/nipy/nipype/pull/1570, https://github.com/nipy/nipype/pull/1586)
ENH: Added support for custom job submission check in SLURM (https://github.com/nipy/nipype/pull/1582)
ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant (https://github.com/nipy/nipype/pull/1654