4,201 research outputs found
Comparative host specificity of human- and pig- associated Staphylococcus aureus clonal lineages.
Bacterial adhesion is a crucial step in colonization of the skin. In this study, we investigated the differential adherence to human and pig corneocytes of six Staphylococcus aureus strains belonging to three human-associated [ST8 (CC8), ST22 (CC22) and ST36(CC30)] and two pig-associated [ST398 (CC398) and ST433(CC30)] clonal lineages, and their colonization potential in the pig host was assessed by in vivo competition experiments. Corneocytes were collected from 11 humans and 21 pigs using D-squame® adhesive discs, and bacterial adherence to corneocytes was quantified by a standardized light microscopy assay. A previously described porcine colonization model was used to assess the potential of the six strains to colonize the pig host. Three pregnant, S. aureus-free sows were inoculated intravaginally shortly before farrowing with different strain mixes [mix 1) human and porcine ST398; mix 2) human ST36 and porcine ST433; and mix 3) human ST8, ST22, ST36 and porcine ST398] and the ability of individual strains to colonize the nasal cavity of newborn piglets was evaluated for 28 days after birth by strain-specific antibiotic selective culture. In the corneocyte assay, the pig-associated ST433 strain and the human-associated ST22 and ST36 strains showed significantly greater adhesion to porcine and human corneocytes, respectively (p<0.0001). In contrast, ST8 and ST398 did not display preferential host binding patterns. In the in vivo competition experiment, ST8 was a better colonizer compared to ST22, ST36, and ST433 prevailed over ST36 in colonizing the newborn piglets. These results are partly in agreement with previous genetic and epidemiological studies indicating the host specificity of ST22, ST36 and ST433 and the broad-host range of ST398. However, our in vitro and in vivo experiments revealed an unexpected ability of ST8 to adhere to porcine corneocytes and persist in the nasal cavity of pigs
Mean effective sensitivity for Mycobacterium avium subsp. paratuberculosis infection in cattle herds
Use of information on disease diagnoses from databases for animal health economic, welfare and food safety purposes: strengths and limitations of recordings
Many animal health, welfare and food safety databases include data on clinical and test-based disease diagnoses. However, the circumstances and constraints for establishing the diagnoses vary considerably among databases. Therefore results based on different databases are difficult to compare and compilation of data in order to perform meta-analysis is almost impossible. Nevertheless, diagnostic information collected either routinely or in research projects is valuable in cross comparisons between databases, but there is a need for improved transparency and documentation of the data and the performance characteristics of tests used to establish diagnoses. The objective of this paper is to outline the circumstances and constraints for recording of disease diagnoses in different types of databases, and to discuss these in the context of disease diagnoses when using them for additional purposes, including research. Finally some limitations and recommendations for use of data and for recording of diagnostic information in the future are given. It is concluded that many research questions have such a specific objective that investigators need to collect their own data. However, there are also examples, where a minimal amount of extra information or continued validation could make sufficient improvement of secondary data to be used for other purposes. Regardless, researchers should always carefully evaluate the opportunities and constraints when they decide to use secondary data. If the data in the existing databases are not sufficiently valid, researchers may have to collect their own data, but improved recording of diagnostic data may improve the usefulness of secondary diagnostic data in the future
The plasma level of soluble urokinase receptor is elevated in patients with Streptococcus pneumoniae bacteraemia and predicts mortality
ABSTRACTThis multicentre prospective study was conducted to investigate whether the level of the soluble form of urokinase-type plasminogen activator receptor (suPAR) is elevated during pneumococcal bacteraemia and is of predictive value in the early stage of the disease. Plasma levels of suPAR were increased significantly (median 5.5; range 2.4–21.0 ng/mL) in 141 patients with pneumococcal bacteraemia, compared to 31 healthy controls (median 2.6, range 1.5–4.0 ng/mL, p 0.001). Furthermore, suPAR levels were elevated significantly in patients who died from the infection (n = 24) compared to survivors (n = 117; p < 0.001). No correlation was found between suPAR levels and C-reactive protein. In univariate logistic regression analysis, hypotension, renal failure, cerebral symptoms and high serum concentrations of protein YKL-40 and suPAR were associated significantly with mortality (p < 0.05). In multivariate analysis, only suPAR remained a significant predictor of death (mortality rate of 13 for suPAR levels of > 10 ng/mL; 95% CI: 1.1–158). The increase in suPAR levels may reflect increased expression by vascular or inflammatory cells in the setting of pneumococcal sepsis. This plasma protein may be used to identify patients who are severely ill with pneumococcal bacteraemia
Epidemiological and economic consequences of purchasing livestock infected with Mycobacterium avium subsp. paratuberculosis
Challenges of Profile Likelihood Evaluation in Multi-Dimensional SUSY Scans
Statistical inference of the fundamental parameters of supersymmetric
theories is a challenging and active endeavor. Several sophisticated algorithms
have been employed to this end. While Markov-Chain Monte Carlo (MCMC) and
nested sampling techniques are geared towards Bayesian inference, they have
also been used to estimate frequentist confidence intervals based on the
profile likelihood ratio. We investigate the performance and appropriate
configuration of MultiNest, a nested sampling based algorithm, when used for
profile likelihood-based analyses both on toy models and on the parameter space
of the Constrained MSSM. We find that while the standard configuration is
appropriate for an accurate reconstruction of the Bayesian posterior, the
profile likelihood is poorly approximated. We identify a more appropriate
MultiNest configuration for profile likelihood analyses, which gives an
excellent exploration of the profile likelihood (albeit at a larger
computational cost), including the identification of the global maximum
likelihood value. We conclude that with the appropriate configuration MultiNest
is a suitable tool for profile likelihood studies, indicating previous claims
to the contrary are not well founded.Comment: 21 pages, 9 figures, 1 table; minor changes following referee report.
Matches version accepted by JHE
Pure spinor computation towards open string three-loop
Using the recent results in the pure spinor formulation, we lay out a
ground-work towards the full momentum space amplitudes of open superstrings at
three-loop. After briefly reviewing the one-loop amplitude, we directly work
out the two-loop and reproduce the result that was obtained by a symmetry
argument. For the three-loop, first we use the two-loop regulator as a warm-up
exercise. The result vanishes. We then employ the regulator that has been
recently proposed by Aisaka and Berkovits (AB). It is noted that the terms in
higher power in that render the two-loop
regulator disqualified for the three-loop do not contribute. This with a few
other indications suggests a possibility that the AB regulator might also lead
to a vanishing result. Nevertheless, we argue that it is possible to acquire
the three-loop amplitude, and present a result that we anticipate to be the
three-loop amplitude.Comment: 41 pages, latex, cosmetic change
Anomalies and the chiral magnetic effect in the Sakai-Sugimoto model
In the chiral magnetic effect an imbalance in the number of left- and
right-handed quarks gives rise to an electromagnetic current parallel to the
magnetic field produced in noncentral heavy-ion collisions. The chiral
imbalance may be induced by topologically nontrivial gluon configurations via
the QCD axial anomaly, while the resulting electromagnetic current itself is a
consequence of the QED anomaly. In the Sakai-Sugimoto model, which in a certain
limit is dual to large-N_c QCD, we discuss the proper implementation of the QED
axial anomaly, the (ambiguous) definition of chiral currents, and the
calculation of the chiral magnetic effect. We show that this model correctly
contains the so-called consistent anomaly, but requires the introduction of a
(holographic) finite counterterm to yield the correct covariant anomaly.
Introducing net chirality through an axial chemical potential, we find a
nonvanishing vector current only before including this counterterm. This seems
to imply the absence of the chiral magnetic effect in this model. On the other
hand, for a conventional quark chemical potential and large magnetic field,
which is of interest in the physics of compact stars, we obtain a nontrivial
result for the axial current that is in agreement with previous calculations
and known exact results for QCD.Comment: 35 pages, 4 figures, v2: added comments about frequency-dependent
conductivity at the end of section 4; references added; version to appear in
JHE
- …