MOESM4 of A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

Additional file 4. Six internal quality control samples were PCR amplified and deep sequenced in duplicate. Expected (first column) and actual (sequencing control samples 1-6, averaged across duplicates) haplotype percentages are similar. The average percent error between duplicates was 4.4% (range 0.4-13.6%)

MOESM7 of A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

Additional file 7. Comparison of demographic factors between sample sequenced individually (n=79) and pooled population cluster samples (N=821) with analysable sequence reads

MOESM2 of A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

Additional file 2. Pfama1 heminested primer sequences and Multiplex identifier (MID) sequences

MOESM2 of Plasmodium falciparum genetic variation of var2csa in the Democratic Republic of the Congo

Additional file 2. Neighbour-joining tree of samples from DRC, Benin and Senegal, produced in Figtree ( http://tree.bio.ed.ac.uk/software/figtree/ ). Edges are coloured from red to blue according to their bootstrap percentage (black edges are terminal and so have no bootstrap value). Dotted lines leading away from the tree are coloured to indicate the origin of the sample