7 research outputs found

    (Tissue) P Systems with Vesicles of Multisets

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    We consider tissue P systems working on vesicles of multisets with the very simple operations of insertion, deletion, and substitution of single objects. With the whole multiset being enclosed in a vesicle, sending it to a target cell can be indicated in those simple rules working on the multiset. As derivation modes we consider the sequential mode, where exactly one rule is applied in a derivation step, and the set maximal mode, where in each derivation step a non-extendable set of rules is applied. With the set maximal mode, computational completeness can already be obtained with tissue P systems having a tree structure, whereas tissue P systems even with an arbitrary communication structure are not computationally complete when working in the sequential mode. Adding polarizations (-1, 0, 1 are sufficient) allows for obtaining computational completeness even for tissue P systems working in the sequential mode.Comment: In Proceedings AFL 2017, arXiv:1708.0622

    TableS2.xlsx

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    <p>Table S2 from "Subtle perturbations of the maize methylome reveal genes and transposons silenced by CHROMOMETHYLASE or RNA-directed DNA methylation pathways" </p><p><br></p><p>Contains expression values, differential expression calls, list assignments, and DMR calls for all genes.</p

    Additional file 5: Figure S2. of Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

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    Co-expression divergence in terms of shortest network path, edge connectivity of a duplicate pair, and local clustering coefficient. (A) WGD duplicates had significantly shorter path edges than inserted and tandem duplicate genes. (B) WGD duplicates had significantly higher edge connectivity than inserted and tandem duplicate genes. (C) Maize1 and maize2 genes had significantly lower local clustering coefficient than non-syntenic genes (usually generated by inserted and tandem duplications). (D) and (E) Shortest network path and edge connectivity of a duplicate pair were associated with synonymous mutation rate (dS). (PDF 740 kb
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