Modeling summer circulation and thermal structure of Lake Erie

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/102215/1/jgrc20419.pd

Lateral dispersion of dye and drifters in the center of a very large lake

To better understand lateral dispersion of buoyant and nonbuoyant pollutants within the surface waters of large lakes, two lateral dispersion experiments were carried out in Lake Michigan during the stratified period: (1) a dye tracking experiment lasting 1 d; and (2) a drifter tracking experiment lasting 24 d. Both the dye patch and drifters were surface‐released at the center of Lake Michigan’s southern basin. Near‐surface shear induced by near‐inertial Poincaré waves partially explains elevated dye dispersion rates (1.5–4.2 m2 s−1). During the largely windless first 5 d of the drifter release, the drifters exhibited nearly scale‐independent dispersion (K ∼ L0.2), with an average dispersion coefficient of 0.14 m2 s−1. Scale‐dependent drifter dispersion ensued after 5 d, with K ∼ L1.09 and corresponding dispersion coefficients of 0.3–2.0 m2 s−1 for length scales L = 1500–8000 m. The largest drifter dispersion rates were found to be associated with lateral shear‐induced spreading along a thermal front. Comparisons with other systems show a wide range of spreading rates for large lakes, and larger rates in both the ocean and the Gulf of Mexico, which may be caused by the relative absence of submesoscale processes in offshore Lake Michigan.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/154278/1/lno11302_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/154278/2/lno11302.pd

Shadow Estimation Method for "The Episolar Constraint: Monocular Shape from Shadow Correspondence"

Recovering shadows is an important step for many vision algorithms. Current approaches that work with time-lapse sequences are limited to simple thresholding heuristics. We show these approaches only work with very careful tuning of parameters, and do not work well for long-term time-lapse sequences taken over the span of many months. We introduce a parameter-free expectation maximization approach which simultaneously estimates shadows, albedo, surface normals, and skylight. This approach is more accurate than previous methods, works over both very short and very long sequences, and is robust to the effects of nonlinear camera response. Finally, we demonstrate that the shadow masks derived through this algorithm substantially improve the performance of sun-based photometric stereo compared to earlier shadow mask estimation

A year of internal Poincaré waves in southern Lake Michigan

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95363/1/jgrc12491.pd

Metabolomics reveals mouse plasma metabolite responses to acute exercise and effects of disrupting AMPK-glycogen interactions

Introduction: The AMP-activated protein kinase (AMPK) is a master regulator of energy homeostasis that becomes activated by exercise and binds glycogen, an important energy store required to meet exercise-induced energy demands. Disruption of AMPK-glycogen interactions in mice reduces exercise capacity and impairs whole-body metabolism. However, the mechanisms underlying these phenotypic effects at rest and following exercise are unknown. Furthermore, the plasma metabolite responses to an acute exercise challenge in mice remain largely uncharacterized. Methods: Plasma samples were collected from wild type (WT) and AMPK double knock-in (DKI) mice with disrupted AMPK-glycogen binding at rest and following 30-min submaximal treadmill running. An untargeted metabolomics approach was utilized to determine the breadth of plasma metabolite changes occurring in response to acute exercise and the effects of disrupting AMPK-glycogen binding. Results: Relative to WT mice, DKI mice had reduced maximal running speed (p < 0.0001) concomitant with increased body mass (p < 0.01) and adiposity (p < 0.001). A total of 83 plasma metabolites were identified/annotated, with 17 metabolites significantly different (p < 0.05; FDR<0.1) in exercised (↑6; ↓11) versus rested mice, including amino acids, acylcarnitines and steroid hormones. Pantothenic acid was reduced in DKI mice versus WT. Distinct plasma metabolite profiles were observed between the rest and exercise conditions and between WT and DKI mice at rest, while metabolite profiles of both genotypes converged following exercise. These differences in metabolite profiles were primarily explained by exercise-associated increases in acylcarnitines and steroid hormones as well as decreases in amino acids and derivatives following exercise. DKI plasma showed greater decreases in amino acids following exercise versus WT. Conclusion: This is the first study to map mouse plasma metabolomic changes following a bout of acute exercise in WT mice and the effects of disrupting AMPK-glycogen interactions in DKI mice. Untargeted metabolomics revealed alterations in metabolite profiles between rested and exercised mice in both genotypes, and between genotypes at rest. This study has uncovered known and previously unreported plasma metabolite responses to acute exercise in WT mice, as well as greater decreases in amino acids following exercise in DKI plasma. Reduced pantothenic acid levels may contribute to differences in fuel utilization in DKI mice

Sensitivity of sediment geochemical proxies to coring location and corer type in a large lake: Implications for paleolimnological reconstruction

We compared a suite of geochemical proxies in sediment cores collected in 1982, 1988, 1991, and 2003 from sites near the depocenter of Lake Erie to evaluate the reliability of paleoenvironmental reconstructions derived from lacustrine sediments. Our proxies included the concentrations and carbon isotopic compositions of organic and inorganic carbon (TOC, CaCO 3 , δ 13 C org , and δ 13 C CaCO3 ), augmented by organic C to total N ratios (C org :N tot ), δ 15 N, and carbonate δ 18 O values (δ 18 O CaCO3 ). The three coring sites were clustered within 12 km; two types of corers—a Box corer and a Benthos gravity corer—were used for the 1991 sampling campaign. The variance of most proxies was accounted for not only by temporal environmental changes but also by coring locations and corer type, indicating that sediment spatial heterogeneity and differences in sediment recovery due to the use of different corers also played a part in determining the geochemical compositions of these cores. The TOC, δ 13 C org , and δ 13 C CaCO3 values showed decadal temporal patterns that were consistent between the multiple sampling campaigns. In contrast, the δ 15 N, C org :N tot , CaCO 3 , and δ 18 O CaCO3 exhibited across‐core differences in their temporal variations, making it difficult to extract consistent environment information from different cores. Our findings suggest that in addition to temporal environmental changes, high‐resolution paleolimnological reconstruction is sensitive to many factors that could include spatial sediment heterogeneity, discontinuous sedimentation processes, bioturbation, sediment dating uncertainty, and artifacts associated with analytical and coring procedures. Therefore, multiple‐core sampling and analysis are important in reliably reconstructing environmental changes, particularly for large, heterogeneous lacustrine basins. Key Points Geochemical proxies in five sediment cores from Lake Erie were compared Geochemical record was sensitive to coring location and corer type Multiple cores are necessary for reliable paleolimnological reconstructionPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/107562/1/ggge20455.pd

Metabolomics reveals mouse plasma metabolite responses to acute exercise and effects of disrupting AMPK-glycogen interactions

Introduction: The AMP-activated protein kinase (AMPK) is a master regulator of energy homeostasis that becomes activated by exercise and binds glycogen, an important energy store required to meet exercise-induced energy demands. Disruption of AMPK-glycogen interactions in mice reduces exercise capacity and impairs whole-body metabolism. However, the mechanisms underlying these phenotypic effects at rest and following exercise are unknown. Furthermore, the plasma metabolite responses to an acute exercise challenge in mice remain largely uncharacterized. Methods : Plasma samples were collected from wild type (WT) and AMPK double knock-in (DKI) mice with disrupted AMPK-glycogen binding at rest and following 30-min submaximal treadmill running. An untargeted metabolomics approach was utilized to determine the breadth of plasma metabolite changes occurring in response to acute exercise and the effects of disrupting AMPK-glycogen binding. Results: Relative to WT mice, DKI mice had reduced maximal running speed (p \u3c 0.0001) concomitant with increased body mass (p \u3c 0.01) and adiposity (p \u3c 0.001). A total of 83 plasma metabolites were identified/annotated, with 17 metabolites significantly different (p \u3c 0.05; FDR \u3c 0.1) in exercised (↑ 6; ↓ 11) versus rested mice, including amino acids, acylcarnitines and steroid hormones. Pantothenic acid was reduced in DKI mice versus WT. Distinct plasma metabolite profiles were observed between the rest and exercise conditions and between WT and DKI mice at rest, while metabolite profiles of both genotypes converged following exercise. These differences in metabolite profiles were primarily explained by exercise-associated increases in acylcarnitines and steroid hormones as well as decreases in amino acids and derivatives following exercise. DKI plasma showed greater decreases in amino acids following exercise versus WT. Conclusion : This is the first study to map mouse plasma metabolomic changes following a bout of acute exercise in WT mice and the effects of disrupting AMPK-glycogen interactions in DKI mice. Untargeted metabolomics revealed alterations in metabolite profiles between rested and exercised mice in both genotypes, and between genotypes at rest. This study has uncovered known and previously unreported plasma metabolite responses to acute exercise in WT mice, as well as greater decreases in amino acids following exercise in DKI plasma. Reduced pantothenic acid levels may contribute to differences in fuel utilization in DKI mice

Lake Erie hypoxia prompts Canada‐U.S. study

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95631/1/eost15589.pd

Summer thermal structure and anticyclonic circulation of Lake Erie

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95057/1/grl29007.pd

The ethics of uncertainty for data subjects

Modern health data practices come with many practical uncertainties. In this paper, I argue that data subjects’ trust in the institutions and organizations that control their data, and their ability to know their own moral obligations in relation to their data, are undermined by significant uncertainties regarding the what, how, and who of mass data collection and analysis. I conclude by considering how proposals for managing situations of high uncertainty might be applied to this problem. These emphasize increasing organizational flexibility, knowledge, and capacity, and reducing hazard