Spatial database implementation of fuzzy region connection calculus for analysing the relationship of diseases

Analyzing huge amounts of spatial data plays an important role in many emerging analysis and decision-making domains such as healthcare, urban planning, agriculture and so on. For extracting meaningful knowledge from geographical data, the relationships between spatial data objects need to be analyzed. An important class of such relationships are topological relations like the connectedness or overlap between regions. While real-world geographical regions such as lakes or forests do not have exact boundaries and are fuzzy, most of the existing analysis methods neglect this inherent feature of topological relations. In this paper, we propose a method for handling the topological relations in spatial databases based on fuzzy region connection calculus (RCC). The proposed method is implemented in PostGIS spatial database and evaluated in analyzing the relationship of diseases as an important application domain. We also used our fuzzy RCC implementation for fuzzification of the skyline operator in spatial databases. The results of the evaluation show that our method provides a more realistic view of spatial relationships and gives more flexibility to the data analyst to extract meaningful and accurate results in comparison with the existing methods.Comment: ICEE201

Fuzzy Least Squares Twin Support Vector Machines

Least Squares Twin Support Vector Machine (LST-SVM) has been shown to be an efficient and fast algorithm for binary classification. It combines the operating principles of Least Squares SVM (LS-SVM) and Twin SVM (T-SVM); it constructs two non-parallel hyperplanes (as in T-SVM) by solving two systems of linear equations (as in LS-SVM). Despite its efficiency, LST-SVM is still unable to cope with two features of real-world problems. First, in many real-world applications, labels of samples are not deterministic; they come naturally with their associated membership degrees. Second, samples in real-world applications may not be equally important and their importance degrees affect the classification. In this paper, we propose Fuzzy LST-SVM (FLST-SVM) to deal with these two characteristics of real-world data. Two models are introduced for FLST-SVM: the first model builds up crisp hyperplanes using training samples and their corresponding membership degrees. The second model, on the other hand, constructs fuzzy hyperplanes using training samples and their membership degrees. Numerical evaluation of the proposed method with synthetic and real datasets demonstrate significant improvement in the classification accuracy of FLST-SVM when compared to well-known existing versions of SVM

BigFCM: Fast, Precise and Scalable FCM on Hadoop

Clustering plays an important role in mining big data both as a modeling technique and a preprocessing step in many data mining process implementations. Fuzzy clustering provides more flexibility than non-fuzzy methods by allowing each data record to belong to more than one cluster to some degree. However, a serious challenge in fuzzy clustering is the lack of scalability. Massive datasets in emerging fields such as geosciences, biology and networking do require parallel and distributed computations with high performance to solve real-world problems. Although some clustering methods are already improved to execute on big data platforms, but their execution time is highly increased for large datasets. In this paper, a scalable Fuzzy C-Means (FCM) clustering named BigFCM is proposed and designed for the Hadoop distributed data platform. Based on the map-reduce programming model, it exploits several mechanisms including an efficient caching design to achieve several orders of magnitude reduction in execution time. Extensive evaluation over multi-gigabyte datasets shows that BigFCM is scalable while it preserves the quality of clustering

DHLP 1&2: Giraph based distributed label propagation algorithms on heterogeneous drug-related networks

Background and Objective: Heterogeneous complex networks are large graphs consisting of different types of nodes and edges. The knowledge extraction from these networks is complicated. Moreover, the scale of these networks is steadily increasing. Thus, scalable methods are required. Methods: In this paper, two distributed label propagation algorithms for heterogeneous networks, namely DHLP-1 and DHLP-2 have been introduced. Biological networks are one type of the heterogeneous complex networks. As a case study, we have measured the efficiency of our proposed DHLP-1 and DHLP-2 algorithms on a biological network consisting of drugs, diseases, and targets. The subject we have studied in this network is drug repositioning but our algorithms can be used as general methods for heterogeneous networks other than the biological network. Results: We compared the proposed algorithms with similar non-distributed versions of them namely MINProp and Heter-LP. The experiments revealed the good performance of the algorithms in terms of running time and accuracy.Comment: Source code available for Apache Giraph on Hadoo