Geometrical structure of benzene and naphthalene: ultrahigh-resolution laser spectroscopy and ab initio calculation.

Geometrical structures of the isolated benzene and naphthalene molecules have been accurately determined by using ultrahigh-resolution laser spectroscopy and ab initio calculation in a complementary manner. The benzene molecule has been identified to be planar and hexagonal (D(6h)) and the structure has been determined with accuracies of 2 × 10(-14) m (0.2 mÅ; 1 Å = 1 × 10(-10) m) for the C-C bond length and 1.0 × 10(-13) m (1.0 mÅ) for the C-H bond length. The naphthalene molecule has been identified to be symmetric with respect to three coordinate axes (D(2h)) and the structure has been determined with comparable accuracies. We discuss the effect of vibrational averaging that is a consequence of zero-point motions on the uncertainty in determining the bond lengths

Internal conversion in the S_1^1B_[3u] state of pyrene

Fluorescence excitation spectra and fluorescence lifetimes at single vibronic levels in the S_1 state have been observed for jet-cooled pyrene. The fluorescence lifetimes at the zero-vibrational levels of the S_1^1B_[3u] states of pyrene-h_10 and pyrene-d10 are 1480 and 1470 ns, respectively, and the relaxation is considered to be dominated by the radiative process. For some vibrational levels, however, the lifetimes are remarkably shorter such as 765 ns at the 22^1 vibronic level of pyrene-h_10 (ν22 (b_[1g]); C–H bending and skeletal deforming mode), indicating that nonradiative transition occurs at a specific vibrational level. In this study, we demonstrate that the main process is internal conversion to the S_0^1Ag state caused by nonadiabatic vibronic interaction via b_[3u] promoting modes

Ultrahigh-resolution laser spectroscopy of the S1 1B2u←S0 1Ag transition of perylene

A rotationally resolved ultrahigh-resolution fluorescence excitation spectrum of the S1 ← S0 transition of perylene has been observed using a collimated supersonic jet technique in conjunction with a single-mode UV laser. We assigned 1568 rotational lines of the 000 band, and accurately determined the rotational constants. The obtained value of inertial defect was positive, accordingly, the perylene molecule is considered to be planar with D2h symmetry. We determined the geometrical structure in the S0 state by ab initio theoretical calculation at the RHF/6-311+G(d, p) level, which yielded rotational constant values approximately identical to those obtained experimentally. Zeeman broadening of each rotational line with the external magnetic field was negligibly small, and the mixing with the triplet state was shown to be very small. This evidence indicates that intersystem crossing (ISC) in the S1 1B2u state is very slow. The rate of internal conversion (IC) is also inferred to be small because the fluorescence quantum yield is high. The rotational constants of the S1 1B2u state were very similar to those of the S0 1Ag state. The slow internal conversion (IC) at the S1 zero-vibrational level is attributed to a small structural change upon electronic transition

Npro of classical swine fever virus contributes to pathogenicity in pigs by preventing type I interferon induction at local replication sites

International audienceClassical swine fever (CSF) caused by CSF virus (CSFV) is a highly contagious disease of pigs. The viral protein Npro of CSFV interferes with alpha- and beta-interferon (IFN-α/β) induction by promoting the degradation of interferon regulatory factor 3 (IRF3). During the establishment of the live attenuated CSF vaccine strain GPE-, Npro acquired a mutation that abolished its capacity to bind and degrade IRF3, rendering it unable to prevent IFN-α/β induction. In a previous study, we showed that the GPE- vaccine virus became pathogenic after forced serial passages in pigs, which was attributed to the amino acid substitutions T830A in the viral proteins E2 and V2475A and A2563V in NS4B. Interestingly, during the re-adaptation of the GPE- vaccine virus in pigs, the IRF3-degrading function of Npro was not recovered. Therefore, we examined whether restoring the ability of Npro to block IFN-α/β induction of both the avirulent and moderately virulent GPE--derived virus would enhance pathogenicity in pigs. Viruses carrying the N136D substitution in Npro regained the ability to degrade IRF3 and suppress IFN-α/β induction in vitro. In pigs, functional Npro significantly reduced the local IFN-α mRNA expression in lymphoid organs while it increased quantities of IFN-α/β in the circulation, and enhanced pathogenicity of the moderately virulent virus. In conclusion, the present study demonstrates that functional Npro influences the innate immune response at local sites of virus replication in pigs and contributes to pathogenicity of CSFV in synergy with viral replication

Mode-selective internal conversion of perylene

We observed fluorescence excitation spectra and dispersed fluorescence spectra for single vibronic level excitation of jet-cooled perylene-h 12 and perylene-d 12, and carefully examined the vibrational structures of the S0[1] A g and S1[1] B 2u states. We performed vibronic assignments on the basis of the results of ab initio calculation, and found that the vibrational energies in the S1 state are very similar to those in the S0 state, indicating that the potential energy curves are not changed much upon electronic excitation. We conclude that the small structural change is the main cause of its slow radiationless transition and high fluorescence quantum yield at the zero-vibrational level in the S1 state. It has been already reported that the lifetime of perylene is remarkably short at specific vibrational levels in the S1 state. Here, we show that the mode-selective nonradiative process is internal conversion (IC) to the S0 state, and the ν16(a g ) in-plane ring deforming vibration is the promoting (doorway) mode in the S1 state which enhances vibronic coupling with the high-vibrational level (b 2u ) of the S0 state

Intracellular membrane association of the N-terminal domain of classical swine fever virus NS4B determines viral genome replication and virulence.

Classical swine fever virus (CSFV) causes a highly contagious disease in pigs that can range from a severe haemorrhagic fever to a nearly unapparent disease, depending on the virulence of the virus strain. Little is known about the viral molecular determinants of CSFV virulence. The nonstructural protein NS4B is essential for viral replication. However, the roles of CSFV NS4B in viral genome replication and pathogenesis have not yet been elucidated. NS4B of the GPE-  vaccine strain and of the highly virulent Eystrup strain differ by a total of seven amino acid residues, two of which are located in the predicted trans-membrane domains of NS4B and were described previously to relate to virulence, and five residues clustering in the N-terminal part. In the present study, we examined the potential role of these five amino acids in modulating genome replication and determining pathogenicity in pigs. A chimeric low virulent GPE- -derived virus carrying the complete Eystrup NS4B showed enhanced pathogenicity in pigs. The in vitro replication efficiency of the NS4B chimeric GPE-  replicon was significantly higher than that of the replicon carrying only the two Eystrup-specific amino acids in NS4B. In silico and in vitro data suggest that the N-terminal part of NS4B forms an amphipathic α-helix structure. The N-terminal NS4B with these five amino acid residues is associated with the intracellular membranes. Taken together, this is the first gain-of-function study showing that the N-terminal domain of NS4B can determine CSFV genome replication in cell culture and viral pathogenicity in pigs