Radiocarbon and geochemical constraints on shallow groundwater recharge in a large arid zone river, Cooper Creek, SW Queensland, Australia.

In the arid and semi-arid internally drained Lake Eyre Basin of central Australia, large mud dominated anabranching river systems transport monsoon derived floodwaters into the centre of the continent during the summer months, and subsequently spend much of the year under low to no flow conditions. Cooper Creek has the largest catchment in this basin, and in south west Queensland has a wide (20-60km) floodplain and multiple channel system. Enlarged channel segments, known as waterholes or billabongs, can retain water throughout much of the dry season, and their mud base can often be scoured during floods into the underlying sandy alluvium where the shallow groundwater table exists 3-5m below the base of the waterholes. Little is known of the groundwater recharge mechanisms in this ecologically important and hydrologically unregulated river system, thus a number of piezometer transects were construct across the floodplain between two waterholes to investigate groundwater recharge processes in further detail. Samples recovered from all piezometers were analysed for major-trace element, water stable isotopes (δ2H and δ180), 3H and 14C. Water stable isotopes reveal shallow groundwater is recharged by high magnitude, low frequency monsoonal flood events, with minor evaporative enrichment probably linked to recent smaller flooding events. 14C dating of dissolved inorganic carbon reveals recharge is most effective beneath the deepest channel segments of the waterholes, and that residence time of the shallow groundwater increases with distance from major waterholes, with the post 1950’s 14C bomb pulse signature present only in close proximity to the channels. 3H allows further refinement of the shallow groundwater residence times, with no 3H detected in groundwater over ~500m from the waterholes, indicating groundwater recharge is slow and restricted to major flooding events. The increase in groundwater residence time with distance from waterholes, is also accompanied by an abrupt increase in salinity, and suggests recent recharge has formed local freshwater lenses above the regional, more saline groundwater. This increase in salinity with increasing distance from the waterholes is not accompanied by an increase on the evaporative signal of water stable isotopes, suggesting evapotranspiration is the dominant mechanism of salinisation within the shallow groundwater beneath the floodplains and minor channels. This study demonstrates that detailed chemical analysis of groundwaters from arid and semi arid areas can provide a useful estimate of recharge where the remote location makes traditional detailed borehole monitoring difficult or impossible to achieve

A two-part seabed geomorphology classification scheme : (v.2). Part 1 : morphology features glossary

This report updates the ‘Two-part Seabed Geomorphology classification scheme’ of Dove et al. (2016) and presents a new glossary (Part 1) of Seabed Morphology features. This Morphology glossary is intended to provide marine scientists with a robust and consistent way to characterise the seabed. Each glossary entry includes a feature definition and a representative schematic diagram to support clear and accurate classification. Feature terms and definitions are primarily drawn from the International Hydrographic Organization (IHO) guide for undersea feature names, which are herein modified and augmented with additional terms to ensure the final feature catalogue and glossary encompasses the diversity of morphologies observed at the seabed, while also minimising duplication and/or ambiguity. This updated classification system and new glossary are the result of a collaboration between marine geoscientists from marine mapping programmes/networks in Norway (MAREANO), Ireland (INFOMAR), UK (MAREMAP), and Australia (Geoscience Australia) (MIM-GA). A subsequent report will present the (Part 2) Geomorphology feature glossar

Continental aridification and the vanishing of Australia\u27s megalakes

The nature of the Australian climate at about the time of rapid megafaunal extinctions and humans arriving in Australia is poorly understood and is an important element in the contentious debate as to whether humans or climate caused the extinctions. Here we present a new paleoshoreline chronology that extends over the past 100 k.y. for Lake Mega-Frome, the coalescence of Lakes Frome, Blanche, Callabonna and Gregory, in the southern latitudes of central Australia. We show that Lake Mega-Frome was connected for the last time to adjacent Lake Eyre at 50-47 ka, forming the largest remaining interconnected system of paleolakes on the Australian continent. The final disconnection and a progressive drop in the level of Lake Mega-Frome represents a major climate shift to aridification that coincided with the arrival of humans and the demise of the megafauna. The supply of moisture to the Australian continent at various times in the Quaternary has commonly been ascribed to an enhanced monsoon. This study, in combination with other paleoclimate data, provides reliable evidence for periods of enhanced tropical and enhanced Southern Ocean sources of water filling these lakes at different times during the last full glacial cycle. © 2011 Geological Society of America

Cyclic ADP ribose isomers: Production, chemical structures, and immune signaling

Cyclic adenosine diphosphate (ADP)–ribose (cADPR) isomers are signaling molecules produced by bacterial and plant Toll/interleukin-1 receptor (TIR) domains via nicotinamide adenine dinucleotide (oxidized form) (NAD+) hydrolysis. We show that v-cADPR (2′cADPR) and v2-cADPR (3′cADPR) isomers are cyclized by O-glycosidic bond formation between the ribose moieties in ADPR. Structures of 2′cADPR-producing TIR domains reveal conformational changes that lead to an active assembly that resembles those of Toll-like receptor adaptor TIR domains. Mutagenesis reveals a conserved tryptophan that is essential for cyclization. We show that 3′cADPR is an activator of ThsA effector proteins from the bacterial antiphage defense system termed Thoeris and a suppressor of plant immunity when produced by the effector HopAM1. Collectively, our results reveal the molecular basis of cADPR isomer production and establish 3′cADPR in bacteria as an antiviral and plant immunity–suppressing signaling molecule

Medical conditions in autism spectrum disorders

Autism spectrum disorder (ASD) is a behaviourally defined syndrome where the etiology and pathophysiology is only partially understood. In a small proportion of children with the condition, a specific medical disorder is identified, but the causal significance in many instances is unclear. Currently, the medical conditions that are best established as probable causes of ASD include Fragile X syndrome, Tuberous Sclerosis and abnormalities of chromosome 15 involving the 15q11-13 region. Various other single gene mutations, genetic syndromes, chromosomal abnormalities and rare de novo copy number variants have been reported as being possibly implicated in etiology, as have several ante and post natal exposures and complications. However, in most instances the evidence base for an association with ASD is very limited and largely derives from case reports or findings from small, highly selected and uncontrolled case series. Not only therefore, is there uncertainty over whether the condition is associated, but the potential basis for the association is very poorly understood. In some cases the medical condition may be a consequence of autism or simply represent an associated feature deriving from an underlying shared etiology. Nevertheless, it is clear that in a growing proportion of individuals potentially causal medical conditions are being identified and clarification of their role in etio-pathogenesis is necessary. Indeed, investigations into the causal mechanisms underlying the association between conditions such as tuberous sclerosis, Fragile X and chromosome 15 abnormalities are beginning to cast light on the molecular and neurobiological pathways involved in the pathophysiology of ASD. It is evident therefore, that much can be learnt from the study of probably causal medical disorders as they represent simpler and more tractable model systems in which to investigate causal mechanisms. Recent advances in genetics, molecular and systems biology and neuroscience now mean that there are unparalleled opportunities to test causal hypotheses and gain fundamental insights into the nature of autism and its development

COVID-19: Rapid antigen detection for SARS-CoV-2 by lateral flow assay: A national systematic evaluation of sensitivity and specificity for mass-testing

Background Lateral flow device (LFD) viral antigen immunoassays have been developed around the world as diagnostic tests for SARS-CoV-2 infection. They have been proposed to deliver an infrastructure-light, cost-economical solution giving results within half an hour. Methods LFDs were initially reviewed by a Department of Health and Social Care team, part of the UK government, from which 64 were selected for further evaluation from 1st August to 15th December 2020. Standardised laboratory evaluations, and for those that met the published criteria, field testing in the Falcon-C19 research study and UK pilots were performed (UK COVID-19 testing centres, hospital, schools, armed forces). Findings 4/64 LFDs so far have desirable performance characteristics (orient Gene, Deepblue, Abbott and Innova SARS-CoV-2 Antigen Rapid Qualitative Test). All these LFDs have a viral antigen detection of >90% at 100,000 RNA copies/ml. 8951 Innova LFD tests were performed with a kit failure rate of 5.6% (502/8951, 95% CI: 5.1–6.1), false positive rate of 0.32% (22/6954, 95% CI: 0.20–0.48). Viral antigen detection/sensitivity across the sampling cohort when performed by laboratory scientists was 78.8% (156/198, 95% CI 72.4–84.3). Interpretation Our results suggest LFDs have promising performance characteristics for mass population testing and can be used to identify infectious positive individuals. The Innova LFD shows good viral antigen detection/sensitivity with excellent specificity, although kit failure rates and the impact of training are potential issues. These results support the expanded evaluation of LFDs, and assessment of greater access to testing on COVID-19 transmission. Funding Department of Health and Social Care. University of Oxford. Public Health England Porton Down, Manchester University NHS Foundation Trust, National Institute of Health Research