Expression Profiling of Salt-Responsive Genes and Transcription Factors in Leaf Transcriptome of <i>Arabidopsis thaliana</i>

This investigation discerns the expression profiles of genes within the leaf transcriptome of Arabidopsis thaliana subjected to salt stress (200 mM NaCl). Notably, the pivotal role of indole acetic acid emerged as a keystone orchestrating a multifaceted cascade of regulatory events aimed at enhancing the plant’s adaptability under salt-induced stress. Cluster analysis elucidated upregulation of gene families with pivotal roles in supporting the availability of carbon dioxide, ameliorating photosynthetic processes and mitigating the deleterious effects of reactive oxygen species under salt stress. Analysis also unveiled the participation of several transcription factor families in the orchestration of a multitude of genes under salt stress. The investigation singled out a solitary TF, denominated as BH100, which was validated through RNA-Seq and qPCR, utilizing a VIGS line featuring the knockdown of the BH100 gene. This transcription factor was implicated in the upregulation of the FRO gene, thereby establishing a link between the synchronized expression of these two genes and their role in promoting iron acquisition under salt stress. In summation, our study unveiled the regulatory frameworks and salt-responsive genes underpinning the response of Arabidopsis to salt stress. We present compelling arguments for the potential applicability of this information in the realm of molecular breeding programs

Elicitor-Mediated Response of Growth, Yield, and Quality of Kalmegh (<i>Andrographis paniculata</i> Wall. ex Nees, Family Acanthaceae)

With the objective of studying the influence of elicitors on the growth, yield, and quality of kalmegh, we carried out an investigation for two consecutive years. Nine treatments with three replications were laid out in a completely randomized design (CRD). Chitosan (CHT), yeast extract (YE), jasmone acid (JA), and salicylic acid (SA)were evaluated at different concentrations. The CHT treatment at 1000 ppm exhibited the tallest plant height (73.91 cm) and the highest number of secondary branches (29.07) at the time of harvest. The primary branches and number of leaves per plant were highest with the CHT treatment at 1000 ppm (26.36; 88.32), and were not significantly different with the SA treatment at 200 ppm (26.28; 81.51). The plant spread was the highest with the SAtreatment at 200 ppm (35.46 cm2) and was not significantly different with the CHT treatment at 1000 ppm (35.11 cm2). The CHT and SA sprays did not result in significant changes in yield parameters, but the highest fresh (42.34 g) and dry (18.30) herbage yields per plant were exhibited with the SA treatment at 200 ppm. The highest total chlorophyll (4.459 mg g−1) and total andrographolide (3.494%) contents were recorded after treatment with the SA spray at 200 ppm. A significant and positive improvement in the growth, yield, and quality of kalmegh was noticed with the salicylic acid spray treatment at 200 ppm 30 and 60 days after sowing (DAS), signifying its benefits for the cultivation of kalmegh in terms of high productivity, quality, and better returns for farmers

Examining the role of AMF-Biochar in the regulation of spinach growth attributes, nutrients concentrations, and antioxidant enzymes in mitigating drought stress

Drought stress is one of the serious threats to crop production. It causes significant deterioration of crop growth and yield by inducing oxidative stress. The biochar and arbuscular mycorrhizae fungi (AMF) can be an effective technique to overcome drought stress. Activated carbon biochar (BC) has the potential to improve soil water holding capacity while AMF inoculation can increase root surface area for better uptake of water. However, their combined application as an amendment against drought still needs scientific justification. That's why the current study was conducted using a combination of AMF and BC on spinach under no drought stress and drought stress. The treatments included i.e., 0, 0.25%, and 0.50%AMF-BC. The experiment was replicated thre times using completely randomized design (CRD). Results showed that 0.5%AMF-BC increase spinach shoot fresh weight (20.34%), shoot dry weight (21.23%), shoot length (3.37%), root fresh weight (16.10%), root dry weight (14.51%), and root length (38.03%) over control under drought stress. The 0.50%AMF-BC increased chlorophyll a (15.33%), chlorophyll b (30.17%), total chlorophyll (18.85%), photosynthetic rate (35.59%), transpiration rate (26.53%), stomatal conductance (13.97%) and internal CO2 concentration (37.15%) compared to control under drought stress. The improvement in N, P, and K concentration in root and shoot verified the efficacious functioning of 0.50%AMF-BC compared to control under drought stress. In conclusion, 0.50%AMF-BC is recommended for the mitigation of drought stress in spinach

Pollution Indexing and Health Risk Assessment of Heavy-Metals-Laden Indoor and Outdoor Dust in Elementary School Environments in Riyadh, Saudi Arabia

The prevalence of potentially toxic heavy metals (HMs)-bearing dust in the environment is posing serious health risks to humans. Therefore, the occurrence of HMs in indoor and outdoor dust samples of elementary school&rsquo;s environment in Riyadh, Saudi Arabia, were reported, and associated potential human health risks were estimated in this study. Dust samples were collected from outdoor and indoor environments from eighteen elementary schools using a soft plastic brush. The mean concentrations of Cd, Co, Cu, Ni, Pb, and Zn in collected indoor dust samples were much higher (0.08, 3.45, 59.20, 15.20, 4.99, and 94.10 mg kg&minus;1, respectively) than that of outdoor dust samples (0.07, 3.07, 42.20, 13.60, 4.57, and 62.40 mg kg&minus;1, respectively), due to fans operation, opened windows, and resuspension of dust by children&rsquo;s activities. The values of estimated enrichment factor revealed that both the outdoor and indoor dusts were moderately contaminated with Zn and Cu, while highly contaminated with Cd and Pb. However, the estimated potential ecological risks associated with HMs were lower. Health risks (non-carcinogenic and carcinogenic) calculations exhibited no potential risks of HMs in the schools&rsquo; dust toward children. However, health risks for children were determined in the following order: up to 6 years &gt; 6&ndash;12 years &gt; adults. Therefore, assessing the potential health risks posed by HM-contaminated dust in school environments is necessary to avoid any possible children&rsquo;s health concerns

Use of zinc quantum dot biochar and AMF for alleviation of Cd stress in maize: Regulation of physiological and biochemical attributes

In different heavy metals, cadmium is one of the acute toxins. It also interferes with various physiological processes in plants, such as photosynthesis, respiration, and enzyme activity. To improve the growth of plants in Cd stress, arbuscular mycorrhizae can play an imperative role. On the other hand, the use of quantum dots technology is also gaining the attention of scientists. That's why the current study investigates the effectiveness of using zinc quantum dot biochar (ZQDB) and arbuscular mycorrhizal fungi (AMF) in alleviating cadmium (Cd) stress in maize plants. The results showed that AMF+ZQDB performed significantly best at the highest level of 5Cd (5mgCd/kg soil) for enhancement in plant height (28.20 %), shoot dry weight (48.78 %), chlorophyll a (32.45 %), chlorophyll b (44.03 %) and total chlorophyll (22.02 %) compared to control (NoAMF+NoZQDB). A significant enhancement in photosynthetic rate (12.95 %) and transpiration rate (39.99 %) concentration of carbon dioxide also validated the effectiveness of AMF+ZQDB over control (NoAMF+NoZQDB) at 5Cd. For photochemical quenching decrease was 25.1 %, 2.98 %, 20.7 %, and 20.3 %, respectively, compared to the control group at 5Cd where NoAMF+NoZQDB, AMF, ZQDB, and AMF+ZQDB treatments were applied. AMF+ZQDB treatment of 5Cd showed a 30.22 % decrease in electron transport rate and 34.67 % decrease in non-photochemical quenching compared to control (NoAMF+NoZQDB). In conclusion, AMF + ZQDB is an effective amendment for alleviating Cd stress in maize by regulating biochemical and physiological attributes. Further investigations are recommended at the field level using different crops to validate the effectiveness of AMF + ZQDB as a promising amendment for minimizing Cd toxicity

Data_Sheet_1_Environment predicts seagrass genotype, phenotype, and associated biodiversity in a temperate ecosystem.pdf

Coastal vegetative ecosystems are among the most threatened in the world, facing multiple anthropogenic stressors. A good example of this is seagrass, which supports carbon capture, coastal stabilization, and biodiversity, but is declining globally at an alarming rate. To understand the causes and consequences of changes to these ecosystems, we need to determine the linkages between different biotic and abiotic components. We used data on the seagrass, Zostera marina, collected by citizen scientists across 300 km of the south coast of the United Kingdom as a case study. We assembled data on seagrass genotype, phenotype, infauna, and associated bathymetry, light, sea surface temperature, and wave and current energy to test hypotheses on the distribution and diversity of this temperate sub-tidal ecosystem. We found spatial structure in population genetics, evident through local assortment of genotypes and isolation by distance across a broader geographic scale. By integrating our molecular data with information on seagrass phenotype and infauna, we demonstrate that these ecosystem components are primarily linked indirectly through the effects of shared environmental factors. It is unusual to examine genotypic, phenotypic, and environmental data in a single study, but this approach can inform both conservation and restoration of seagrass, as well as giving new insights into a widespread and important ecosystem.</p

Abundant resistome determinants in rhizosphere soil of the wild plant Abutilon fruticosum

Abstract A metagenomic whole genome shotgun sequencing approach was used for rhizospheric soil micribiome of the wild plant Abutilon fruticosum in order to detect antibiotic resistance genes (ARGs) along with their antibiotic resistance mechanisms and to detect potential risk of these ARGs to human health upon transfer to clinical isolates. The study emphasized the potential risk to human health of such human pathogenic or commensal bacteria, being transferred via food chain or horizontally transferred to human clinical isolates. The top highly abundant rhizospheric soil non-redundant ARGs that are prevalent in bacterial human pathogens or colonizers (commensal) included mtrA, soxR, vanRO, golS, rbpA, kdpE, rpoB2, arr-1, efrA and ileS genes. Human pathogenic/colonizer bacteria existing in this soil rhizosphere included members of genera Mycobacterium, Vibrio, Klebsiella, Stenotrophomonas, Pseudomonas, Nocardia, Salmonella, Escherichia, Citrobacter, Serratia, Shigella, Cronobacter and Bifidobacterium. These bacteria belong to phyla Actinobacteria and Proteobacteria. The most highly abundant resistance mechanisms included antibiotic efflux pump, antibiotic target alteration, antibiotic target protection and antibiotic inactivation. antimicrobial resistance (AMR) families of the resistance mechanism of antibiotic efflux pump included resistance-nodulation-cell division (RND) antibiotic efflux pump (for mtrA, soxR and golS genes), major facilitator superfamily (MFS) antibiotic efflux pump (for soxR gene), the two-component regulatory kdpDE system (for kdpE gene) and ATP-binding cassette (ABC) antibiotic efflux pump (for efrA gene). AMR families of the resistance mechanism of antibiotic target alteration included glycopeptide resistance gene cluster (for vanRO gene), rifamycin-resistant beta-subunit of RNA polymerase (for rpoB2 gene) and antibiotic-resistant isoleucyl-tRNA synthetase (for ileS gene). AMR families of the resistance mechanism of antibiotic target protection included bacterial RNA polymerase-binding protein (for RbpA gene), while those of the resistance mechanism of antibiotic inactivation included rifampin ADP-ribosyltransferase (for arr-1 gene). Better agricultural and food transport practices are required especially for edible plant parts or those used in folkloric medicine

Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum

Abstract The operative mechanisms and advantageous synergies existing between the rhizobiome and the wild plant species Abutilon fruticosum were studied. Within the purview of this scientific study, the reservoir of genes in the rhizobiome, encoding the most highly enriched enzymes, was dominantly constituted by members of phylum Thaumarchaeota within the archaeal kingdom, phylum Proteobacteria within the bacterial kingdom, and the phylum Streptophyta within the eukaryotic kingdom. The ensemble of enzymes encoded through plant exudation exhibited affiliations with 15 crosstalking KEGG (Kyoto Encyclopaedia of Genes and Genomes) pathways. The ultimate goal underlying root exudation, as surmised from the present investigation, was the biosynthesis of saccharides, amino acids, and nucleic acids, which are imperative for the sustenance, propagation, or reproduction of microbial consortia. The symbiotic companionship existing between the wild plant and its associated rhizobiome amplifies the resilience of the microbial community against adverse abiotic stresses, achieved through the orchestration of ABA (abscisic acid) signaling and its cascading downstream effects. Emergent from the process of exudation are pivotal bioactive compounds including ATP, D-ribose, pyruvate, glucose, glutamine, and thiamine diphosphate. In conclusion, we hypothesize that future efforts to enhance the growth and productivity of commercially important crop plants under both favorable and unfavorable environmental conditions may focus on manipulating plant rhizobiomes