11 research outputs found
CAZyme class annotation distribution of <i>C</i>. <i>bantiana</i> UM 956 genome.
<p>(A) Comparison of the distribution of CAZyme catalytic domains between <i>C</i>. <i>bantiana</i> and fungi from various lifestyles. (B) Comparison of the plant cell wall degrading potential from CAZyme analysis between <i>C</i>. <i>bantiana</i> and fungi from various lifestyles. AA: auxiliary activities; CBM: carbohydrate binding module; CE: carbohydrate esterase; GH: glycoside hydrolase; GT: glycosyltransferase and PL, polysaccharide lyase.</p
Colonial characteristic and microscopic morphology of <i>C</i>. <i>bantiana</i>.
<p>The (A) surface and (B) close-up view of the colonial morphology of <i>C</i>. <i>bantiana</i> after being cultured for seven days. Light micrograph showing (C) smooth walled, pale olivaceous, ellipsoidal to spindle-shaped conidia arranged in long, strongly coherent chains (400× magnification, bars 20 μm).</p
Bayesian phylogram generated using the combined gene sequences of ITS and LSU.
<p>The tree was rooted with <i>Plococarpus schaereri</i> AFTOL-ID 2289 as outgroup. The numbers on the nodes indicate Bayesian posterior probability based on 100 sampling frequencies for a total of 100,000 generations.</p
Genome content of <i>C</i>. <i>bantiana</i> UM 956 and other previously sequenced fungal genomes.
<p>Genome content of <i>C</i>. <i>bantiana</i> UM 956 and other previously sequenced fungal genomes.</p
KOG class annotation distribution of <i>C</i>. <i>bantiana</i> UM 956 genome.
<p>A total of 7,185 of protein-coding genes were annotated by KOG. The proteins were assigned into different KOG functionary categories as shown in the pie chart.</p
Shared gene families in both <i>C</i>. <i>bantiana</i> UM 956 and <i>E</i>. <i>dermatitidis</i> NIH/UT8656.
<p>Shared gene families in both <i>C</i>. <i>bantiana</i> UM 956 and <i>E</i>. <i>dermatitidis</i> NIH/UT8656.</p
Siderophore genes of <i>C</i>. <i>bantiana</i> UM 956 genome.
<p>(A) FC synthetase <i>SidC</i> gene. (Top panel) Schematic map of <i>SidC</i> (black arrow) and adjacent genes. Gray arrows are genes which are expected to function during siderophore biosynthesis. Numbers are in kilobases. (Bottom panel) Domain setup of SidC. (B) FSC synthetase <i>SidD</i> gene. (Top panel) Schematic map of <i>SidD</i> (black arrow) and adjacent genes. Numbers are in kilobases. (Bottom panel) Domain setup of SidD.</p
Homology model of the CbSAP3.
<p>(A) Three-dimensional ribbon structures of CbSAP3 and <i>C</i>. <i>albicans</i> SAP3. α-helices are shown in red; β-sheets are shown in yellow and random coils are shown in black. The N- and C- terminal end are labeled. (B) Active sites comparison of the CbSAP3 and <i>C</i>. <i>albicans</i> SAP3. Carbon atoms are shown in green; nitrogen atoms are shown in blue; oxygen atoms are shown in red. Hydrogen bonds are shown in pink dotted lines.</p
KEGG classifications of proteins in <i>C</i>. <i>bantiana</i> UM 956 genome.
<p>The proteins were assigned into different KEGG metabolic pathway categories as shown in the pie chart. A total of 2,506 protein-coding genes were involved in metabolic pathway based on the KEGG database.</p
Comparative phylogenomic analysis of <i>C</i>. <i>bantiana</i> UM 956 along with eight previously published dematiaceous fungal genomes using Bayesian.
<p>Number at the node referring to Bayesian posterior probability. The tree is rooted with <i>C</i>. <i>neoformans var</i>. <i>grubii</i> H99 as outgroup.</p