Rapid behavioral transitions produce chaotic mixing by a planktonic microswimmer

Despite their vast morphological diversity, many invertebrates have similar larval forms characterized by ciliary bands, innervated arrays of beating cilia that facilitate swimming and feeding. Hydrodynamics suggests that these bands should tightly constrain the behavioral strategies available to the larvae; however, their apparent ubiquity suggests that these bands also confer substantial adaptive advantages. Here, we use hydrodynamic techniques to investigate "blinking," an unusual behavioral phenomenon observed in many invertebrate larvae in which ciliary bands across the body rapidly change beating direction and produce transient rearrangement of the local flow field. Using a general theoretical model combined with quantitative experiments on starfish larvae, we find that the natural rhythm of larval blinking is hydrodynamically optimal for inducing strong mixing of the local fluid environment due to transient streamline crossing, thereby maximizing the larvae's overall feeding rate. Our results are consistent with previous hypotheses that filter feeding organisms may use chaotic mixing dynamics to overcome circulation constraints in viscous environments, and it suggests physical underpinnings for complex neurally-driven behaviors in early-divergent animals.Comment: 20 pages, 4 figure

Communication Cost for Updating Linear Functions when Message Updates are Sparse: Connections to Maximally Recoverable Codes

We consider a communication problem in which an update of the source message needs to be conveyed to one or more distant receivers that are interested in maintaining specific linear functions of the source message. The setting is one in which the updates are sparse in nature, and where neither the source nor the receiver(s) is aware of the exact {\em difference vector}, but only know the amount of sparsity that is present in the difference-vector. Under this setting, we are interested in devising linear encoding and decoding schemes that minimize the communication cost involved. We show that the optimal solution to this problem is closely related to the notion of maximally recoverable codes (MRCs), which were originally introduced in the context of coding for storage systems. In the context of storage, MRCs guarantee optimal erasure protection when the system is partially constrained to have local parity relations among the storage nodes. In our problem, we show that optimal solutions exist if and only if MRCs of certain kind (identified by the desired linear functions) exist. We consider point-to-point and broadcast versions of the problem, and identify connections to MRCs under both these settings. For the point-to-point setting, we show that our linear-encoder based achievable scheme is optimal even when non-linear encoding is permitted. The theory is illustrated in the context of updating erasure coded storage nodes. We present examples based on modern storage codes such as the minimum bandwidth regenerating codes.Comment: To Appear in IEEE Transactions on Information Theor

Codes with Locality for Two Erasures

In this paper, we study codes with locality that can recover from two erasures via a sequence of two local, parity-check computations. By a local parity-check computation, we mean recovery via a single parity-check equation associated to small Hamming weight. Earlier approaches considered recovery in parallel; the sequential approach allows us to potentially construct codes with improved minimum distance. These codes, which we refer to as locally 2-reconstructible codes, are a natural generalization along one direction, of codes with all-symbol locality introduced by Gopalan \textit{et al}, in which recovery from a single erasure is considered. By studying the Generalized Hamming Weights of the dual code, we derive upper bounds on the minimum distance of locally 2-reconstructible codes and provide constructions for a family of codes based on Tur\'an graphs, that are optimal with respect to this bound. The minimum distance bound derived here is universal in the sense that no code which permits all-symbol local recovery from $2$ erasures can have larger minimum distance regardless of approach adopted. Our approach also leads to a new bound on the minimum distance of codes with all-symbol locality for the single-erasure case.Comment: 14 pages, 3 figures, Updated for improved readabilit

Fast Lean Erasure-Coded Atomic Memory Object

In this work, we propose FLECKS, an algorithm which implements atomic memory objects in a multi-writer multi-reader (MWMR) setting in asynchronous networks and server failures. FLECKS substantially reduces storage and communication costs over its replication-based counterparts by employing erasure-codes. FLECKS outperforms the previously proposed algorithms in terms of the metrics that to deliver good performance such as storage cost per object, communication cost a high fault-tolerance of clients and servers, guaranteed liveness of operation, and a given number of communication rounds per operation, etc. We provide proofs for liveness and atomicity properties of FLECKS and derive worst-case latency bounds for the operations. We implemented and deployed FLECKS in cloud-based clusters and demonstrate that FLECKS has substantially lower storage and bandwidth costs, and significantly lower latency of operations than the replication-based mechanisms

Optimal Linear Codes with a Local-Error-Correction Property

Motivated by applications to distributed storage, Gopalan \textit{et al} recently introduced the interesting notion of information-symbol locality in a linear code. By this it is meant that each message symbol appears in a parity-check equation associated with small Hamming weight, thereby enabling recovery of the message symbol by examining a small number of other code symbols. This notion is expanded to the case when all code symbols, not just the message symbols, are covered by such "local" parity. In this paper, we extend the results of Gopalan et. al. so as to permit recovery of an erased code symbol even in the presence of errors in local parity symbols. We present tight bounds on the minimum distance of such codes and exhibit codes that are optimal with respect to the local error-correction property. As a corollary, we obtain an upper bound on the minimum distance of a concatenated code.Comment: 13 pages, Shorter version submitted to ISIT 201