24 research outputs found
Electronic structures, bonding and energetics of non-heme mono and dinuclear iron-TPA complexes: a computational exploration
Electronic structures, bonding aspects and spectroscopic parameters of homo/hetero valent bridged dinuclear transition metal complexes
Oxidation of methane by an N-bridged high-valent diiron–oxo species: electronic structure implications on the reactivity
Methane activation by dinuclear high-valent iron–oxo species: do we need two metals to activate such inert bonds? Our theoretical study using DFT methods where electronic structure details and mechanistic aspects are established answers this intriguing question.</p
Deciphering the origin of million-fold reactivity observed for the open core diiron [HO–Fe<sup>III</sup>–O–Fe<sup>IV</sup>O]<sup>2+</sup>species towards C–H bond activation: role of spin-states, spin-coupling, and spin-cooperation
Our results unequivocally reveal the importance of spin states, spin coupling and spin cooperation in controlling the reactivity in dinuclear Fe-oxo species.</p
Mechanism of Hydroboration of CO<sub>2</sub> Using an Fe Catalyst: What Controls the Reactivity and Product Selectivity?
Mechanism of Hydroboration of CO<sub>2</sub> Using an Fe Catalyst: What Controls the Reactivity and Product Selectivity?
Using a combination of density functional theory (DFT)
and ab initio
complete active space self-consistent field (CASSCF) calculations,
various elementary steps in the mechanism of the reductive hydroboration
of CO2 to two-electron-reduced boryl formate, four-electron-reduced
bis(boryl)acetal, and six-electron-reduced methoxy borane by the [Fe(H)2(dmpe)2] catalyst were established. The replacement
of hydride by oxygen ligation after the boryl formate insertion step
is the rate-determining step. Our work unveils, for the first time,
(i) how a substrate steers product selectivity in this reaction and
(ii) the importance of configurational mixing in contracting the kinetic
barrier heights. Based on the reaction mechanism established, we have
further focused on the effect of other metals, such as Mn and Co,
on rate-determining steps and on catalyst regeneration
Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II
Structural and spectroscopic
investigations of compound II in ascorbate
peroxidase (APX) have yielded conflicting conclusions regarding the
protonation state of the crucial Fe(IV) intermediate. Neutron diffraction
and crystallographic data support an iron(IV)-hydroxo formulation,
whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance
vibrational spectroscopy (NRVS) studies appear consistent with an
iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented
QM/MM calculations and extensive exploration of the conformational
space for both possible formulations of compound II. We establish
that irrespective of variations in the orientation of a vicinal arginine
residue and potential reorganization of proximal water molecules and
hydrogen bonding, the Fe–O distances for the oxo and hydroxo
forms consistently fall within distinct, narrow, and nonoverlapping
ranges. The accuracy of geometric parameters is validated by coupled-cluster
calculations with the domain-based local pair natural orbital approach,
DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are
conducted for all structural variants, encompassing Mössbauer,
optical, X-ray absorption, and X-ray emission spectroscopies and NRVS.
All spectroscopic observations can be assigned uniquely to an Fe(IV)O
form. A terminal hydroxy group cannot be reconciled with the spectroscopic
data. Under no conditions can the Fe(IV)O distance be sufficiently
elongated to approach the crystallographically reported Fe–O
distance. The latter is consistent only with a hydroxo species, either
Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)O
formulation of APX-II and highlight unresolved discrepancies in the
nature of samples used across different experimental studies
Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II
Structural and spectroscopic
investigations of compound II in ascorbate
peroxidase (APX) have yielded conflicting conclusions regarding the
protonation state of the crucial Fe(IV) intermediate. Neutron diffraction
and crystallographic data support an iron(IV)-hydroxo formulation,
whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance
vibrational spectroscopy (NRVS) studies appear consistent with an
iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented
QM/MM calculations and extensive exploration of the conformational
space for both possible formulations of compound II. We establish
that irrespective of variations in the orientation of a vicinal arginine
residue and potential reorganization of proximal water molecules and
hydrogen bonding, the Fe–O distances for the oxo and hydroxo
forms consistently fall within distinct, narrow, and nonoverlapping
ranges. The accuracy of geometric parameters is validated by coupled-cluster
calculations with the domain-based local pair natural orbital approach,
DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are
conducted for all structural variants, encompassing Mössbauer,
optical, X-ray absorption, and X-ray emission spectroscopies and NRVS.
All spectroscopic observations can be assigned uniquely to an Fe(IV)O
form. A terminal hydroxy group cannot be reconciled with the spectroscopic
data. Under no conditions can the Fe(IV)O distance be sufficiently
elongated to approach the crystallographically reported Fe–O
distance. The latter is consistent only with a hydroxo species, either
Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)O
formulation of APX-II and highlight unresolved discrepancies in the
nature of samples used across different experimental studies
Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II
Structural and spectroscopic
investigations of compound II in ascorbate
peroxidase (APX) have yielded conflicting conclusions regarding the
protonation state of the crucial Fe(IV) intermediate. Neutron diffraction
and crystallographic data support an iron(IV)-hydroxo formulation,
whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance
vibrational spectroscopy (NRVS) studies appear consistent with an
iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented
QM/MM calculations and extensive exploration of the conformational
space for both possible formulations of compound II. We establish
that irrespective of variations in the orientation of a vicinal arginine
residue and potential reorganization of proximal water molecules and
hydrogen bonding, the Fe–O distances for the oxo and hydroxo
forms consistently fall within distinct, narrow, and nonoverlapping
ranges. The accuracy of geometric parameters is validated by coupled-cluster
calculations with the domain-based local pair natural orbital approach,
DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are
conducted for all structural variants, encompassing Mössbauer,
optical, X-ray absorption, and X-ray emission spectroscopies and NRVS.
All spectroscopic observations can be assigned uniquely to an Fe(IV)O
form. A terminal hydroxy group cannot be reconciled with the spectroscopic
data. Under no conditions can the Fe(IV)O distance be sufficiently
elongated to approach the crystallographically reported Fe–O
distance. The latter is consistent only with a hydroxo species, either
Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)O
formulation of APX-II and highlight unresolved discrepancies in the
nature of samples used across different experimental studies
Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II
Structural and spectroscopic
investigations of compound II in ascorbate
peroxidase (APX) have yielded conflicting conclusions regarding the
protonation state of the crucial Fe(IV) intermediate. Neutron diffraction
and crystallographic data support an iron(IV)-hydroxo formulation,
whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance
vibrational spectroscopy (NRVS) studies appear consistent with an
iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented
QM/MM calculations and extensive exploration of the conformational
space for both possible formulations of compound II. We establish
that irrespective of variations in the orientation of a vicinal arginine
residue and potential reorganization of proximal water molecules and
hydrogen bonding, the Fe–O distances for the oxo and hydroxo
forms consistently fall within distinct, narrow, and nonoverlapping
ranges. The accuracy of geometric parameters is validated by coupled-cluster
calculations with the domain-based local pair natural orbital approach,
DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are
conducted for all structural variants, encompassing Mössbauer,
optical, X-ray absorption, and X-ray emission spectroscopies and NRVS.
All spectroscopic observations can be assigned uniquely to an Fe(IV)O
form. A terminal hydroxy group cannot be reconciled with the spectroscopic
data. Under no conditions can the Fe(IV)O distance be sufficiently
elongated to approach the crystallographically reported Fe–O
distance. The latter is consistent only with a hydroxo species, either
Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)O
formulation of APX-II and highlight unresolved discrepancies in the
nature of samples used across different experimental studies
