1,981 research outputs found
Dynamic mercury methylation and demethylation in oligotrophic marine water
Mercury bioaccumulation in open-ocean food webs depends on the net rate of
inorganic mercury conversion to monomethylmercury in the water column. We
measured significant methylation rates across large gradients in oxygen
utilization in the oligotrophic central Pacific Ocean. Overall, methylation
rates over 24 h incubation periods were comparable to those previously
published from Arctic and Mediterranean waters despite differences in
productivity between these marine environments. In contrast to previous
studies that have attributed Hg methylation to heterotrophic bacteria, we
measured higher methylation rates in filtered water compared to unfiltered
water. Furthermore, we observed enhanced demethylation of newly produced
methylated mercury in incubations of unfiltered water relative to filtered
water. The addition of station-specific bulk filtered particulate matter, a
source of inorganic mercury substrate and other possibly influential
compounds, did not stimulate sustained methylation, although transient
enhancement of methylation occurred within 8 h of addition. The addition
of dissolved inorganic cobalt also produced dramatic, if transient, increases
in mercury methylation. Our results suggest important roles for noncellular
or extracellular methylation mechanisms and demethylation in determining
methylated mercury concentrations in marine oligotrophic waters. Methylation
and demethylation occur dynamically in the open-ocean water column, even in
regions with low accumulation of methylated mercury.</p
Soil carbon pools are affected by species identity and productivity in a tree common garden experiment
The formation and turnover of soil organic carbon (C), the largest terrestrial C pool, is strongly impacted by the ultimate source of that C: leaves, wood, roots, and root exudates. The quantity and quality of these inputs is determined by the identity of the plants involved. Yet substantial uncertainty surrounds the complex relationships among plant traits and soil C, precluding efforts to maximize whole-ecosystem C uptake in nature-based climate mitigation scenarios. In this study, we leveraged a biodiversity-ecosystem function experiment with trees (IDENT) to explore the effects of interspecific variation in plant traits on soil C dynamics in the very early stages of stand development (9 years since planting). Mineral soil C stocks to 5 cm depth were quantified in monospecific plots of 19 tree species planted on a former agricultural field, and analyzed in relation to tree growth and functional traits. We found that tree species identity affected soil bulk density and, to a lesser extent, the carbon content of the topsoil, and thereby total C pools. Among species and across plots, mineral soil C stocks were positively correlated with rates of tree growth and were significantly larger beneath broadleaf trees with “fast” functional traits vs. conifers with more conservative leaf traits, when comparisons were made over equivalent soil depth increments. Thus, plant functional traits mediate interspecific differences in productivity, which in turn influence the magnitude of belowground C stocks. These results highlight important linkages between above- and belowground carbon cycles in the earliest stages of afforestation
Hamster and Murine Models of Severe Destructive Lyme Arthritis
Arthritis is a frequent complication of infection in humans with Borrelia burgdorferi. Weeks to months following the onset of Lyme borreliosis, a histopathological reaction characteristic of synovitis including bone, joint, muscle, or tendon pain may occur. A subpopulation of patients may progress to a chronic, debilitating arthritis months to years after infection which has been classified as severe destructive Lyme arthritis. This arthritis involves focal bone erosion and destruction of articular cartilage. Hamsters and mice are animal models that have been utilized to study articular manifestations of Lyme borreliosis. Infection of immunocompetent LSH hamsters or C3H mice results in a transient synovitis. However, severe destructive Lyme arthritis can be induced by infecting irradiated hamsters or mice and immunocompetent Borrelia-vaccinated hamsters, mice, and interferon-gamma- (IFN-γ-) deficient mice with viable B. burgdorferi. The hamster model of severe destructive Lyme arthritis facilitates easy assessment of Lyme borreliosis vaccine preparations for deleterious effects while murine models of severe destructive Lyme arthritis allow for investigation of mechanisms of immunopathology
Laboratory Focus on Improving the Culture of Biosafety: Statewide Risk Assessment of Clinical Laboratories That Process Specimens for Microbiologic Analysis
The Wisconsin State Laboratory of Hygiene challenged Wisconsin laboratories to examine their biosafety practices and improve their culture of biosafety. One hundred three clinical and public health laboratories completed a questionnaire-based, microbiology-focused biosafety risk assessment. Greater than 96% of the respondents performed activities related to specimen processing, direct microscopic examination, and rapid nonmolecular testing, while approximately 60% performed culture interpretation. Although they are important to the assessment of risk, data specific to patient occupation, symptoms, and travel history were often unavailable to the laboratory and, therefore, less contributory to a microbiology-focused biosafety risk assessment than information on the specimen source and test requisition. Over 88% of the respondents complied with more than three-quarters of the mitigation control measures listed in the survey. Facility assessment revealed that subsets of laboratories that claim biosafety level 1, 2, or 3 status did not possess all of the biosafety elements considered minimally standard for their respective classifications. Many laboratories reported being able to quickly correct the minor deficiencies identified. Task assessment identified deficiencies that trended higher within the general (not microbiology-specific) laboratory for core activities, such as packaging and shipping, direct microscopic examination, and culture modalities solely involving screens for organism growth. For traditional microbiology departments, opportunities for improvement in the cultivation and management of highly infectious agents, such as acid-fast bacilli and systemic fungi, were revealed. These results derived from a survey of a large cohort of small- and large-scale laboratories suggest the necessity for continued microbiology-based understanding of biosafety practices, vigilance toward biosafety, and enforcement of biosafety practices throughout the laboratory setting
Discovery and genotyping of structural variation from long-read haploid genome sequence data
In an effort to more fully understand the full spectrum of human genetic variation, we generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human genomes. By using an assembly-based approach (SMRT-SV), we systematically assessed each genome independently for structural variants (SVs) and indels resolving the sequence structure of 461,553 genetic variants from 2 bp to 28 kbp in length. We find that >89% of these variants have been missed as part of analysis of the 1000 Genomes Project even after adjusting for more common variants (MAF > 1%). We estimate that this theoretical human diploid differs by as much as ∼16 Mbp with respect to the human reference, with long-read sequencing data providing a fivefold increase in sensitivity for genetic variants ranging in size from 7 bp to 1 kbp compared with short-read sequence data. Although a large fraction of genetic variants were not detected by short-read approaches, once the alternate allele is sequence-resolved, we show that 61% of SVs can be genotyped in short-read sequence data sets with high accuracy. Uncoupling discovery from genotyping thus allows for the majority of this missed common variation to be genotyped in the human population. Interestingly, when we repeat SV detection on a pseudodiploid genome constructed in silico by merging the two haploids, we find that ∼59% of the heterozygous SVs are no longer detected by SMRT-SV. These results indicate that haploid resolution of long-read sequencing data will significantly increase sensitivity of SV detection.</jats:p
Beta-delayed-neutron studies of Sb and I performed with trapped ions
Beta-delayed-neutron (n) spectroscopy was performed using the
Beta-decay Paul Trap and an array of radiation detectors. The n
branching ratios and energy spectra for Sb and I were
obtained by measuring the time of flight of recoil ions emerging from the
trapped ion cloud. These nuclei are located at the edge of an isotopic region
identified as having n branching ratios that impact the r-process
abundance pattern around the A~130 peak. For Sb and I,
n branching ratios of 14.6(11)%, 17.6(28)%, and 7.6(28)% were
determined, respectively. The n energy spectra obtained for Sb
and I are compared with results from direct neutron measurements, and
the n energy spectrum for Sb has been measured for the first
time
Strengthening Public Health in Wisconsin Through the Wisconsin Clinical Laboratory Network
The Wisconsin Clinical Laboratory Network (WCLN) at the University of Wisconsin–Madison is a partnership of 138 clinical and public health laboratories (as of February 2019) coordinated by the Wisconsin State Laboratory of Hygiene. This article describes the WCLN, its current activities, and lessons learned through this partnership. A laboratory technical advisory group, which consists of representatives from clinical laboratories, provides clinical laboratory perspective to the WCLN and fosters communication among laboratories. Activities and resources available through the WCLN include annual regional meetings, annual technical workshops, webinars, an email listserv, laboratory informational messages, in-person visits by a WCLN coordinator to clinical laboratories, and laboratory-based surveillance data and summaries distributed by the Wisconsin State Laboratory of Hygiene. One challenge to maintaining the WCLN is securing continual funding for network activities. Key lessons learned from this partnership of more than 20 years include the importance of in-person meetings, the clinical perspective of the laboratory technical advisory group, and providing activities and resources to clinical laboratories to foster sharing of data and clinical specimens for public health surveillance and outbreak response
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