Chicken skeletal muscle-associated macroarray for gene discovery

Macro- and microarrays are well-established technologies to determine gene functions through repeated measurements of transcript abundance. We constructed a chicken skeletal muscle-associated array based on a muscle-specific EST database, which was used to generate a tissue expression dataset of similar to 4500 chicken genes across 5 adult tissues (skeletal muscle, heart, liver, brain, and skin). Only a small number of ESTs were sufficiently well characterized by BLAST searches to determine their probable cellular functions. Evidence of a particular tissue-characteristic expression can be considered an indication that the transcript is likely to be functionally significant. The skeletal muscle macroarray platform was first used to search for evidence of tissue-specific expression, focusing on the biological function of genes/transcripts, since gene expression profiles generated across tissues were found to be reliable and consistent. Hierarchical clustering analysis revealed consistent clustering among genes assigned to 'developmental growth', such as the ontology genes and germ layers. Accuracy of the expression data was supported by comparing information from known transcripts and tissue from which the transcript was derived with macroarray data. Hybridization assays resulted in consistent tissue expression profile, which will be useful to dissect tissue-regulatory networks and to predict functions of novel genes identified after extensive sequencing of the genomes of model organisms. Screening our skeletal-muscle platform using 5 chicken adult tissues allowed us identifying 43 'tissue-specific' transcripts, and 112 co-expressed uncharacterized transcripts with 62 putative motifs. This platform also represents an important tool for functional investigation of novel genes; to determine expression pattern according to developmental stages; to evaluate differences in muscular growth potential between chicken lines, and to identify tissue-specific genes.Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP

Determinação do volume, do fator de forma e da porcentagem de casca de árvores individuais em uma Floresta Ombrófila Aberta na região noroeste de Mato Grosso Determination of bark percentage and volume of individual trees in an Open Ombrophylous Forest in northwest Mato Grosso

O objetivo deste estudo foi testar e selecionar modelos que expressam o volume com e sem casca e determinar o fator de forma e a porcentagem de casca para uma área de floresta ombrófila aberta na região noroeste de Mato Grosso. Foi realizada a cubagem rigorosa de 91 árvores para a obtenção do diâmetro, espessura de casca, altura total do fuste e volume sólido. Dez modelos volumétricos foram testados, sendo que para a seleção do melhor modelo foram usadas as estatísticas do coeficiente de determinação ajustado, erro padrão da estimativa, seguida da análise de resíduos e distribuição gráfica dos resíduos. Os modelos selecionados foram validados pela aplicação do teste L&O. O fator de forma médio obtido foi de 0,7424 e 0,7297 com e sem casca, respectivamente. O volume médio de casca foi de 0,4292 m³ (7,45% do volume total). O modelo de Schumacher-Hall foi o que melhor se ajustou aos dados de volumes com e sem casca.<br>This study aimed to test and select models, with and without bark volume, and to determine the form factor and bark percentage of an open ombrophylous forest in northwest Mato Grosso. 91 trees were cubed by obtaining diameter, bark percentage, stem height and solid stem volume. A total of 10 models were tested. Statistical procedures, such as adjusted determination coefficient, residual error and distribution of residuals, were tested. The selected models were validated by the L&O test. The average form factor was 0.7424 and 0.7297, with and without bark, respectively. The average volume of bark was 0.4292 m³ (7.45% of total volume). The Schumacher-Hall model showed the best performance for volumes with and without bark