A survey on utilization of data mining approaches for dermatological (skin) diseases prediction

Due to recent technology advances, large volumes of medical data is obtained. These data contain valuable information. Therefore data mining techniques can be used to extract useful patterns. This paper is intended to introduce data mining and its various techniques and a survey of the available literature on medical data mining. We emphasize mainly on the application of data mining on skin diseases. A categorization has been provided based on the different data mining techniques. The utility of the various data mining methodologies is highlighted. Generally association mining is suitable for extracting rules. It has been used especially in cancer diagnosis. Classification is a robust method in medical mining. In this paper, we have summarized the different uses of classification in dermatology. It is one of the most important methods for diagnosis of erythemato-squamous diseases. There are different methods like Neural Networks, Genetic Algorithms and fuzzy classifiaction in this topic. Clustering is a useful method in medical images mining. The purpose of clustering techniques is to find a structure for the given data by finding similarities between data according to data characteristics. Clustering has some applications in dermatology. Besides introducing different mining methods, we have investigated some challenges which exist in mining skin data

Sugarcane mosaic virus: The causal agent of mosaic disease on sorghum (Sorghum bicolor L.) in Tehran province of Iran

During disease diagnosing studies on sorghum fields in Tehran province, Iran through vegetation period in 2005 - 2006, 75 sorghum expressing virus-associated symptoms including mosaic, leafredding and necrosis were collected. The virus was inoculated mechanically to Sweet corn (Zea mays cv. Pars403) and grain sorghum (Sorghum bicolor cv. Kimia). The virus specifically was reacted in Double Antibody Sandwich-Enzyme Linked Immunosorbent Assay (DAS-ELISA) and Dot Immunobinding Assay (DIBA). Also relative molecular mass of virus coat protein was calculated using adensitometer via sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) to determine electrophoretic mobility compared with protein standards. The virus reacted with anti SCMV polyclonal IgG antiserum and was detected with Goat anti-Rabbit IgG alkaline phosphatase conjugate. The total nucleic acids were subjected to reverse transcription-polymerase chain reaction (RT-PCR) using SCMV degenerate and specific primers. Sugarcane mosaic virus (SCMV) was detected in allcollected samples. The capsid protein was evaluated approximately 37 kDa in size. Amplification product (approximately 900 bp) was obtained from the collected and inoculated plants but not from healthy plants. This may confirm the presence of SCMV in the symptom-expressing plants

Mesoporous TiO₂ electrodes with different thickness for dye sensitized solar cell application

Mesoporous TiO2 films with different thicknesses were prepared for dye sensitized solar cell application using dip coating method. The crystal structure and morphology of the films were studied by scanning electron microscope and X-ray diffraction. The optical properties of the films were investigated through UV–Vis absorption. With increasing film thickness from 3.1 to 13.9 μm, the efficiency increases from 0.81 to 3.09 %

Mapping of QTLs for frost tolerance and heading time using SSR markers in bread wheat

Selection for complex genetic traits, such as frost tolerance, can be simplified in plant breeding programs when linked markers were detected. The use of microsatellite markers for tagging and mapping important genes or QTLs is a goal in wheat genetic projects. In this study, 200 microsatellite markers were studied and after parental assay, 41 polymorphic SSR markers were used for genotyping of 280 F2 individual plants derived from F1 generation of wheat cross (Norstar× Zagros). The progeny of individual F2 plants were used as F2:3 families for the assessment of LT50 and heading time. Single marker analysis revealed that seven markers with total of 27% of phenotypic variance determination linked to LT50 and five markers linked to the heading time. Two markers that were located on 2B and 5A chromosomes affected both LT50 and heading time significantly. It was assumed, therefore, that someclosely linked QTLs or QTLs with pleiotropic effects govern both traits simultaneously, as the LT50 of F2:3 families were significantly correlated with the heading time of F2:3 families, Thus, it is concluded that later heading time is associated with the higher level of frost tolerance in wheat

Pollen-pistil compatibility relationships in some Iranian almond (Prunus dulcis, Batch) genotypes as revealed by PCR analysis

The identification of pollen-pistil compatibility relationships among almond cultivars and genotypes is very important for breeders and growers. In the present study, PCR based technique was used to identify S-alleles in 10 late blooming almond genotypes. In total, 19 alleles were amplified by five primer pairs in the studied genotypes. The size of bands ranged between 480 - 2000 bp. Seven S-alleles were amplified using AS1II/AMYC5R primer pair, whereas each of the Alsc11/AMYC5R, Pru-C2/Pru-C4R, Pru-C2/Pru-C5R and Pru-C2/Pru-C6R primer pairs amplified nine different S-alleles. Based on S-allele patterns, all of the studied genotypes were identified as self-incompatible. However, some of the genotypes had only one similar S-allele, all of the genotypes could be used in establishment of commercial orchards based on their blooming times

Identification of Immunotopes against Mycobacterium leprae as Immune Targets Using PhDTm- 12mer Phage Display Peptide Library

Purpose: To determine the surface epitopes of Mycobacterium leprae (M. leprae) and evaluate their efficacy in the production of anti-M. leprae antibodies in an animal model.Methods: Blood samples were obtained from 34 patients suffering from lepromatous leprosy. Antibodies were obtained from the samples, semi-purified and used to coat the wells of ELISA microplate, and M13 random-peptides library was added to the wells. After four rounds of panning, three clones were isolated and their peptide mimotopes were sequenced. Western blot was used to evaluate the interaction of the isolated mimotopes.Results: Three selective clones were tested by direct enzyme-linked immunosorbent assay (ELISA) and western blot. anti-leprae antibodies in various dilutions and were found to be serological active. Sequencing of the isolated peptides showed identities between the two clones that were able to successfully induce anti-Leprae humoral response in mice.Conclusion: The findings indicate that the isolated peptides can potentially be used for early diagnosis. However, further research is required to improve their potency as new vaccines against leprosy.Keywords: Bacteriophage, Vaccine, Leprosy, Mycobacterium leprae, Random Peptide Phage Display Librar

Analysis of bovine growth hormone gene polymorphism of local and Holstein cattle breeds in Kerman province of Iran using polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP)

Bovine growth hormone (bGH) gene is a part of the multiple gene family that contains prolactin and placental lactogens. Also, variations in introns have potential usefulness as genetic markers and could help in the genetic improvement of populations. Genomic DNA was isolated from blood samples of two local herds (53 animals) and two Holstein herds (50 animals). Genomic DNA samples were genotyped for the GHI-AluI polymorphism by polymerase chain reaction restriction fragment length polymorphism (PCR-RFLP). A 211 bp (bGH) gene exon 5 segment was amplified by PCR using bovine specific primers. RFLPs in this segment were studied using AluI restriction enzyme. The frequencies of V and L alleles in the local and Holstein herds were 0.2 and 0.65, respectively. For both herds, significant difference from the Hardy-Weinberg equilibrium was observed.Key words: Growth hormone, polymorphism, polymerase chain reaction restriction fragment length polymorphism, local herds, Holstein herds

A facile low temperature route to deposit a TiO<inf>2</inf> scattering layer for efficient dye-sensitized solar cells

Hydrolysis of TiCl4 at low temperature formed an efficient scattering layer in dye-sensitized solar cell architecture, which leads to an improvement in the light harvesting and a remarkable reduction of electronic disorder of mesoporous-TiO2.Nava Technology Limited, Iran Nanotechnology Initiative Council, Nyak Technology Limited, Engineering and Physical Sciences Research CouncilThis is the author accepted manuscript. The final version is available from Royal Society of Chemistry via http://dx.doi.org/10.1039/C6RA13273

Protocol study: Sexual and reproductive health knowledge, information-seeking behaviour and attitudes among Saudi women: A questionnaire survey of university students

Copyright © 2014 Farih et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.Background - Sexual and reproductive health (SRH), a basic right for women worldwide, is infrequently researched in countries in the Middle East and North Africa (MENA). No empirical studies of SRH among Saudi women exist. This protocol describes a study to explore the SRH knowledge, information-seeking behaviour and attitudes of Saudi female university students. Methods/Design - This study will administer a questionnaire survey to female students at 13 universities in Riyadh, Saudi Arabia. The questionnaire was developed following a literature search to identify relevant content, with psychometrically tested tools used when available. The content layout and the wording and order of the questions were designed to minimize the risk of bias. The questionnaire has been translated into Arabic and piloted in preparation for administration to the study sample. Ethical approval for the study has been granted (reference no. QMREC2012/54). After questionnaire administration, the data will be collated, analysed and reported anonymously. The findings will be published in compliance with reporting guidelines for survey research. Discussion - This study will be the first to provide fundamental information concerning Saudi females university students SRH knowledge and information needs.King Abdullah Scholarship Program, Saudi Arabi