DNA Binding and Recognition of a CC Mismatch in a DNA Duplex by Water-Soluble Peptidocalix[4]arenes: Synthesis and Applications

Water-soluble peptidocalix[4]­arenes were synthesized by the introduction of arginine-rich narrow groove-binding residues at lower rims through solid-phase synthesis. The study of binding of these water-soluble bidentate ligands to well-matched and mismatched DNA duplexes by fluorescent titrations, ethidium bromide (EB) displacement assays, DNA-melting experiments, and circular dichroism (CD) analysis revealed a sequence-dependent groove-binding mechanism

Detection of surface-immobilized anti-CD34 antibodies using quantum dots.

<div><p>When films were immunostained with red QD-IgG fluorescent labels, (A) control POSS-PCU and (B) POSS-PCU-FS did not exhibit fluorescence, as compared to (C-D) POSS-PCU-FS+CD34 films, which showed uniform immobilization of bound antibodies on the film even after washing by mechanical shaking for 24 and 72 hrs (10x magnification). (E) Measurements of samples’ residual fluorescent intensities after 24 and 72 hrs of washing demonstrates that antibodies remain stably bound. Error bars: ± SD; NS denotes no significant difference (<i>p</i> > 0.05).</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

EPCs under light microscopy.

<p>(<b>A</b>) An EPC colony, defined morphologically as a central cluster of rounded cells surrounded by multiple spindle-shaped cells (20x magnification). (<b>B</b>-<b>D</b>) Expression of VEGFR-2 (red) and CD34 (green) was assessed under laser scanning confocal microscopy (10x magnification). Double-positive colonies (yellow) were identified as EPC colonies. Scale bar represents 20 µm.</p

Water contact angle measurements of unmodified and modified POSS-PCU surfaces, using a sessile drop method.

<div><p>Biofunctionalization with anti-CD34 antibodies significantly reduces the mean water contact angle value compared to POSS-PCU and POSS-PCU-FS. Error bars: ± SD; * denotes <i>p</i> < 0.05.</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

Surface characterization of unmodified and modified POSS-PCU surfaces by scanning electron microscopy at 2000x magnification.

<div><p><b>A</b> POSS-PCU B POSS-PCU-FS C POSS-PCU-FS+CD34.</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

Platelet adhesion assay.

<div><p>(<b>A</b>-<b>C</b>) SEM images (2000x and 5000x magnification) show the greatest number of platelets adhering to POSS-PCU surfaces. (<b>A</b>) POSS-PCU, (<b>B</b>) POSS-PCU-FS, (<b>C</b>) POSS-PCU-FS+CD34. (<b>D</b>) The degree of platelet adhesion, expressed as the Platelet Adhesion Index, was significantly reduced by incorporation of FS and subsequent conjugation of anti-CD34 antibodies. *denotes a significant difference (<i>p</i> < 0.05).</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

EPC extraction from peripheral blood.

<p>The buffy coat layer contains EPCs, which were cultured on test samples.</p

Platelet activation assay.

<div><p>SEM images (2000x magnification) of adhered platelets show distinctly different morphological appearances. (<b>A</b>) Collagen, (<b>B</b>) POSS-PCU, (<b>C</b>) POSS-PCU-FS, (<b>D</b>) POSS-PCU-FS+CD34. Adhered platelets found on collagen-coated surfaces (positive control, <b>A</b>), showed the highest degree of activation, with formation of distinct pseudopodia and hyaloplasm spreading. Platelets adhering on POSS-PCU (<b>B</b>) and POSS-PCU-FS (<b>C</b>) were mostly dendritic-spread, with prominent pseudopodia as well as some flattening. Those adhered to POSS-PCU-FS+CD34 (<b>D</b>) remained dendritic with a clear spherical body and without any evident flattening.</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

Representative TEG profiles of blood in contact with the modified and unmodified POSS-PCU surfaces.

<div><p>Standard unmodified TEG cups with citrated whole blood were used as positive controls, whereas standard cups containing citrated blood mixed with the anti-coagulant L-arginine were used as negative controls. Profiles demonstrate a similar cigar-shape, indicating functional hemostasis.</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div

EPC colony counts.

<div><p>Number of double-positive CD34⁺ / VEGFR-2⁺ EPC colonies formed per 10⁶ cells plated was enumerated after 7 days of culture on the different surfaces. Error bars: ± SD; # denotes a significant difference (<i>p</i> < 0.05) between positive control and all other groups; * denotes a significant difference (<i>p</i> < 0.05) between POSS-PCU-FS+CD34 and POSS-PCU-FS+IgG. Scale bar represents 20 µm.</p> <p>POSS-PCU-FS: POSS-PCU with fumed silica anchors, POSS-PCU-FS+CD34: POSS-PCU biofunctionalized with anti-CD34 antibodies.</p></div