Function and dynamics of PKD2 in Chlamydomonas reinhardtii flagella

To analyze the function of ciliary polycystic kidney disease 2 (PKD2) and its relationship to intraflagellar transport (IFT), we cloned the gene encoding Chlamydomonas reinhardtii PKD2 (CrPKD2), a protein with the characteristics of PKD2 family members. Three forms of this protein (210, 120, and 90 kD) were detected in whole cells; the two smaller forms are cleavage products of the 210-kD protein and were the predominant forms in flagella. In cells expressing CrPKD2–GFP, about 10% of flagellar CrPKD2–GFP was observed moving in the flagellar membrane. When IFT was blocked, fluorescence recovery after photobleaching of flagellar CrPKD2–GFP was attenuated and CrPKD2 accumulated in the flagella. Flagellar CrPKD2 increased fourfold during gametogenesis, and several CrPKD2 RNA interference strains showed defects in flagella-dependent mating. These results suggest that the CrPKD2 cation channel is involved in coupling flagellar adhesion at the beginning of mating to the increase in flagellar calcium required for subsequent steps in mating

Winter mesoscale circulation on the shelf slope region of the southern Drake Passage

Author Posting. © The Author(s), 2013. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 90 (2013): 4-14, doi:10.1016/j.dsr2.2013.03.041.An austral winter cruise in July-August 2006 was conducted to study the winter circulation and iron delivery processes in the Southern Drake Passage and Bransfield Strait. Results from current and hydrographic measurements revealed a circulation pattern similar to that of the austral summer season observed in previous studies: The Shackleton Transverse Ridge (STR) in the southern Drake Passage blocks a part of the eastward Antarctic Circumpolar Current (ACC) which forces the ACC to detour southward, produces a Taylor Column over the STR, and forms an ACC jet within the Shackleton Gap, a deep channel between the STR and the shelf of Elephant Island. Observations show that to the west of the STR, the Upper Circumpolar Deep Water (UCDW) intruded onto the shelf around the South Shetland Islands while to the east of the STR, shelf waters were transported off the northern shelf of Elephant Island. Along a similar west-east transect approximately 50 km off the shelf, the northward transport of shelf waters was approximately 2.4 and 1.2 Sv in the austral winter and summer, respectively. The waters around Elephant Island primarily consist of the UCDW that has been modified by local cooling and freshening, unmodified UCDW that has recently intruded onto the shelf, and Bransfield Current water that is a mixture of shelf and Bransfield Strait waters. Weddell Sea outflows were observed which affect the hydrography and circulation in the Bransfield Strait and indirectly affect the circulation patterns in the southern Drake Passage and around Elephant Island. Two Fe enrichment and transport mechanisms are proposed that intrusions of the UCDW onto the northern shelf region of the South Shetland Islands is considered as the results of Ekman pumping due to prevailing westerly wind in the region while the offshelf transport of shelf waters in the shelf region east of Elephant Island is due to acquisition of positive vorticity by shelf waters from horizontal mixing with onshelf intruded ACC waters.This project was supported by the National Science Foundation grant numbers OPP-0229966, ANT-0444040 and ANT-0948378 to M. Zhou, OPP0230445, ANT0443403 and ANT-0948357 to C. Measures, ANT0443869 and ANT-0948442 to M. Charette, and OPP0230443, ANT0444134 and ANT0948338 to B.G. Mitchell

Satellite detection of dinoflagellate blooms off California by UV reflectance ratios

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kahru, M., Anderson, C., Barton, A. D., Carter, M. L., Catlett, D., Send, U., Sosik, H. M., Weiss, E. L., & Mitchell, B. G. Satellite detection of dinoflagellate blooms off California by UV reflectance ratios. Elementa: Science of the Anthropocene, 9(1), (2021): 00157, https://doi.org/10.1525/elementa.2020.00157.As harmful algae blooms are increasing in frequency and magnitude, one goal of a new generation of higher spectral resolution satellite missions is to improve the potential of satellite optical data to monitor these events. A satellite-based algorithm proposed over two decades ago was used for the first time to monitor the extent and temporal evolution of a massive bloom of the dinoflagellate Lingulodinium polyedra off Southern California during April and May 2020. The algorithm uses ultraviolet (UV) data that have only recently become available from the single ocean color sensor on the Japanese GCOM-C satellite. Dinoflagellates contain high concentrations of mycosporine-like amino acids and release colored dissolved organic matter, both of which absorb strongly in the UV part of the spectrum. Ratios 1, consistent with historical observations showing a sharp transition from dinoflagellate- to diatom-dominated waters in these areas. UV bands are thus potentially useful in the remote sensing of phytoplankton blooms but are currently available only from a single ocean color sensor. As several new satellites such as the NASA Plankton, Aerosol, Cloud, and marine Ecosystem mission will include UV bands, new algorithms using these bands are needed to enable better monitoring of blooms, especially potentially harmful algal blooms, across large spatiotemporal scales.Part of this work was funded by National Science Foundation (NSF) grants to the CCE-LTER Program, most recently OCE-1637632. Processing of Second-Generation Global Imager satellite data was funded by Japan Aerospace Exploration Agency. Data shown in Figure 1 were collected by BGM and MK with support from the NASA SIMBIOS project. DC was supported by the NASA Biodiversity and Ecological Forecasting Program (Grant NNX14AR62A), the Bureau of Ocean and Energy Management Ecosystem Studies Program (BOEM award MC15AC00006), and the NOAA through the Santa Barbara Channel Marine Biodiversity Observation Network. HMS was supported by NSF (Grant OCE-1810927) and the Simons Foundation (Grant 561126). ELW was supported by NSF GRFP (Grant DGE-1650112). Funding for Scripps and Santa Monica Piers sampling was through the Southern California Coastal Ocean Observing Harmful Algal Bloom Monitoring Program by NOAA NA16NOS0120022

Numerical Confirmation of Late-time t^{1/2} Growth in Three-dimensional Phase Ordering

Results for the late-time regime of phase ordering in three dimensions are reported, based on numerical integration of the time-dependent Ginzburg-Landau equation with nonconserved order parameter at zero temperature. For very large systems ($700^3$) at late times, $t \ge 150,$ the characteristic length grows as a power law, $R(t) \sim t^n$, with the measured $n$ in agreement with the theoretically expected result $n=1/2$ to within statistical errors. In this time regime $R(t)$ is found to be in excellent agreement with the analytical result of Ohta, Jasnow, and Kawasaki [Phys. Rev. Lett. {\bf 49}, 1223 (1982)]. At early times, good agreement is found between the simulations and the linearized theory with corrections due to the lattice anisotropy.Comment: Substantially revised and enlarged, submitted to PR

Oregon 2100: projected climatic and ecological changes

Greenhouse climatic warming is underway and exacerbated by human activities. Future outcomes of these processes can be projected using computer models checked against climatic changes during comparable past atmospheric compositions. This study gives concise quantitative predictions for future climate, landscapes, soils, vegetation, and marine and terrestrial animals of Oregon. Fossil fuel burning and other human activities by the year 2100 are projected to yield atmospheric CO2 levels of about 600-850 ppm (SRES A1B and B1), well above current levels of 400 ppm and preindustrial levels of 280 ppm. Such a greenhouse climate was last recorded in Oregon during the middle Miocene, some 16 million years ago. Oregon’s future may be guided by fossil records of the middle Miocene, as well as ongoing studies on the environmental tolerances of Oregon plants and animals, and experiments on the biological effects of global warming. As carbon dioxide levels increase, Oregon’s climate will move toward warm temperate, humid in the west and semiarid to subhumid to the east, with increased summer and winter drought in the west. Western Oregon lowlands will become less suitable for temperate fruits and nuts and Pinot Noir grapes, but its hills will remain a productive softwood forest resource. Improved pasture and winter wheat crops will become more widespread in eastern Oregon. Tsunamis and stronger storms will exacerbate marine erosion along the Oregon Coast, with significant damage to coastal properties and cultural resources

Precision Measurement of PArity Violation in Polarized Cold Neutron Capture on the Proton: the NPDGamma Experiment

The NPDGamma experiment at the Los Alamos Neutron Science Center (LANSCE) is dedicated to measure with high precision the parity violating asymmetry in the $\gamma$ emission after capture of spin polarized cold neutrons in para-hydrogen. The measurement will determine unambiguously the weak pion-nucleon-nucleon ($\pi NN$) coupling constant {\it f$^1_{\pi}$}Comment: Proceedings of the PANIC'05 Conference, Santa Fe, NM, USA, October 24-28, 2005, 3 pages, 2 figure

New evidence on Allyn Young's style and influence as a teacher

This paper publishes the hitherto unpublished correspondence between Allyn Abbott Young's biographer Charles Blitch and 17 of Young's former students or associates. Together with related biographical and archival material, the paper shows the way in which this adds to our knowledge of Young's considerable influence as a teacher upon some of the twentieth century's greatest economists. The correspondents are as follows: James W Angell, Colin Clark, Arthur H Cole, Lauchlin Currie, Melvin G de Chazeau, Eleanor Lansing Dulles, Howard S Ellis, Frank W Fetter, Earl J Hamilton, Seymour S Harris, Richard S Howey, Nicholas Kaldor, Melvin M Knight, Bertil Ohlin, Geoffrey Shepherd, Overton H Taylor, and Gilbert Walker

The Impossibility of a Perfectly Competitive Labor Market

Using the institutional theory of transaction cost, I demonstrate that the assumptions of the competitive labor market model are internally contradictory and lead to the conclusion that on purely theoretical grounds a perfectly competitive labor market is a logical impossibility. By extension, the familiar diagram of wage determination by supply and demand is also a logical impossibility and the neoclassical labor demand curve is not a well-defined construct. The reason is that the perfectly competitive market model presumes zero transaction cost and with zero transaction cost all labor is hired as independent contractors, implying multi-person firms, the employment relationship, and labor market disappear. With positive transaction cost, on the other hand, employment contracts are incomplete and the labor supply curve to the firm is upward sloping, again causing the labor demand curve to be ill-defined. As a result, theory suggests that wage rates are always and everywhere an amalgam of an administered and bargained price. Working Paper 06-0