Identification and characterization of agrobacterium tumefaciens virD2-binding protein

Ph.DDOCTOR OF PHILOSOPH

Complex genetic architecture underlying the plasticity of maize agronomic traits

Phenotypic plasticity is the ability of a given genotype to produce multiple phenotypes in response to changing environmental conditions. Understanding the genetic basis of phenotypic plasticity and establishing a predictive model is highly relevant to future agriculture under a changing climate. Here we report findings on the genetic basis of phenotypic plasticity for 23 complex traits using a diverse maize population planted at five sites with distinct environmental conditions. We found that latitude -related environmental factors were the main drivers of across-site variation in flowering time traits but not in plant architecture or yield traits. For the 23 traits, we detected 109 quantitative trait loci (QTLs), 29 for mean values, 66 for plasticity, and 14 for both parameters, and 80% of the QTLs interacted with latitude. The effects of several QTLs changed in magnitude or sign, driving variation in phenotypic plasticity. We experimentally validated one plastic gene, ZmTPS14.1, whose effect was likely mediated by the compen-sation effect of ZmSPL6 from a downstream pathway. By integrating genetic diversity, environmental vari-ation, and their interaction into a joint model, we could provide site-specific predictions with increased accuracy by as much as 9.9%, 2.2%, and 2.6% for days to tassel, plant height, and ear weight, respectively. This study revealed a complex genetic architecture involving multiple alleles, pleiotropy, and genotype-by -environment interaction that underlies variation in the mean and plasticity of maize complex traits. It provides novel insights into the dynamic genetic architecture of agronomic traits in response to changing environments, paving a practical way toward precision agriculture

Variation of Tensor Force due to Nuclear Medium Effect

The enhancement of $J^{\pi}(T)$=3$^{+}$(0) state with isospin $T=0$ excited by the tensor force in the free $^{6}$Li nucleus has been observed, for the first time, relative to a shrinkable excitation in the $^{6}$Li cluster component inside its host nucleus. Comparatively, the excitation of $J^{\pi}(T)$=0$^{+}$(1) state with isospin $T=1$ for these two $^{6}$Li formations take on an approximately equal excitation strength. The mechanism of such tensor force effect was proposed due to the intensive nuclear medium role on isospin $T$=0 state.Comment: 6 pages, 4 figure

Aspect of Clusters Correlation at Light Nuclei Excited State

The correlation of $\alpha\alpha$ was probed via measuring the transverse momentum $p_{T}$ and width $\delta p_{T}$ of one $\alpha$, for the first time, which represents the spatial and dynamical essentialities of the initial coupling state in $^{8}$Be nucleus. The weighted interaction vertex of 3$\alpha$ reflected by the magnitudes of their relative momentums and relative emission angles proves the isosceles triangle configuration for 3$\alpha$ at the high excited energy analogous Hoyle states.Comment: 8 pages, 9 figure

Multi-alpha Boson Gas state in Fusion Evaporation Reaction and Three-body Force

The experimental evidence for the $\alpha$ Boson gas state in the $^{11}$C+$^{12}$C$\rightarrow$$^{23}$Mg$^{\ast}$ fusion evaporation reaction is presented. By measuring the $\alpha$ emission spectrum with multiplicity 2 and 3, we provide insight into the existence of a three-body force among $\alpha$ particles. The observed spectrum exhibited distinct tails corresponding to $\alpha$ particles emitted in pairs and triplets consistent well with the model-calculations of AV18-UX and chiral effective field theory of NV2-3-la*, indicating the formation of $\alpha$ clusters with three-body force in the Boson gas state.Comment: 7 pages, 6 figure

Agrobacterium fabrum atu0526-Encoding Protein Is the Only Chemoreceptor That Regulates Chemoattraction toward the Broad Antibacterial Agent Formic Acid

Soil-born plant pathogens, especially Agrobacterium, generally navigate their way to hosts through recognition of the root exudates by chemoreceptors. However, there is still a lack of appropriate identification of chemoreceptors and their ligands in Agrobacterium. Here, Atu0526, a sCache-type chemoreceptor from Agrobacterium fabrum C58, was confirmed as the receptor of a broad antibacterial agent, formic acid. The binding of formic acid to Atu0526 was screened using a thermo shift assay and verified using isothermal titration calorimetry. Inconsistent with the previously reported antimicrobial properties, formic acid was confirmed to be a chemoattractant to A. fabrum and could promote its growth. The chemotaxis of A. fabrum C58 toward formic acid was completely lost with the knock-out of atu0526, and regained with the complementation of the gene, indicating that Atu0526 is the only chemoreceptor for formic acid in A. fabrum C58. The affinity of formic acid to Atu0526LBD significantly increased after the arginine at position 115 was replaced by alanine. However, in vivo experiments showed that the R115A mutation fully abolished the chemotaxis of A. fabrum toward formic acid. Molecular docking based on a predicted 3D structure of Atu0526 suggested that the arginine may provide “an anchorage” for formic acid to pull the minor loop, thereby forming a conformational change that generates the ligand-binding signal. Collectively, our findings will promote an understanding of sCache-type chemoreceptors and their signal transduction mechanism

The Only Chemoreceptor Encoded by che Operon Affects the Chemotactic Response of Agrobacterium to Various Chemoeffectors

Chemoreceptor (also called methyl-accepting chemotaxis protein, MCP) is the leading signal protein in the chemotaxis signaling pathway. MCP senses and binds chemoeffectors, specifically, and transmits the sensed signal to downstream proteins of the chemotaxis signaling system. The genome of Agrobacterium fabrum (previously, tumefaciens) C58 predicts that a total of 20 genes can encode MCP, but only the MCP-encoding gene atu0514 is located inside the che operon. Hence, the identification of the exact function of atu0514-encoding chemoreceptor (here, named as MCP514) will be very important for us to understand more deeply the chemotaxis signal transduction mechanism of A. fabrum. The deletion of atu0514 significantly decreased the chemotactic migration of A. fabrum in a swim plate. The test of atu0514-deletion mutant (Δ514) chemotaxis toward single chemicals showed that the deficiency of MCP514 significantly weakened the chemotactic response of A. fabrum to four various chemicals, sucrose, valine, citric acid and acetosyringone (AS), but did not completely abolish the chemotactic response. MCP514 was localized at cell poles although it lacks a transmembrane (TM) region and is predicted to be a cytoplasmic chemoreceptor. The replacement of residue Phe328 showed that the helical structure in the hairpin subdomain of MCP514 is a direct determinant for the cellular localization of MCP514. Single respective replacements of key residues indicated that residues Asn336 and Val353 play a key role in maintaining the chemotactic function of MCP514

Tailoring Heterogeneous Microstructure in a High-Strength Low-Alloy Steel for Enhanced Strength-Toughness Balance

The attainment of both strength and toughness is of vital importance to most structural materials, although unfortunately they are generally mutually exclusive. Here, we report that simultaneous increases in strength and toughness in a high-strength low-alloy (HSLA) steel were achieved by tailoring the heterogeneous microstructure consisting of soft intercritical ferrite and hard martensite via intercritical heat treatment. The heterogeneous microstructure features were studied from the perspective of morphology and crystallography to uncover the effect on mechanical properties. Specifically, the volume fraction of martensite increased with increasing annealing temperature, which resulted in increased back stress and effective stress, and thereby an improved strength-ductility combination. The enrichment of carbon and alloying elements in the martensite was lowered with the increase in annealing temperature. As a result, the hardness difference between the intercritical ferrite and martensite was reduced. In addition, the globular reversed austenite preferentially grew into the adjacent austenite grain that held no Kurdjumov-Sachs (K-S) orientation relationship with it, which effectively refined the coarse prior austenite grains and increased the density of high angle grain boundaries. The synergy of these two factors contributed to the improved low-temperature toughness. This work demonstrates a strategy for designing heterostructured HSLA steels with superior mechanical properties

Tailoring Heterogeneous Microstructure in a High-Strength Low-Alloy Steel for Enhanced Strength-Toughness Balance

The attainment of both strength and toughness is of vital importance to most structural materials, although unfortunately they are generally mutually exclusive. Here, we report that simultaneous increases in strength and toughness in a high-strength low-alloy (HSLA) steel were achieved by tailoring the heterogeneous microstructure consisting of soft intercritical ferrite and hard martensite via intercritical heat treatment. The heterogeneous microstructure features were studied from the perspective of morphology and crystallography to uncover the effect on mechanical properties. Specifically, the volume fraction of martensite increased with increasing annealing temperature, which resulted in increased back stress and effective stress, and thereby an improved strength-ductility combination. The enrichment of carbon and alloying elements in the martensite was lowered with the increase in annealing temperature. As a result, the hardness difference between the intercritical ferrite and martensite was reduced. In addition, the globular reversed austenite preferentially grew into the adjacent austenite grain that held no Kurdjumov-Sachs (K-S) orientation relationship with it, which effectively refined the coarse prior austenite grains and increased the density of high angle grain boundaries. The synergy of these two factors contributed to the improved low-temperature toughness. This work demonstrates a strategy for designing heterostructured HSLA steels with superior mechanical properties