Exactly Solvable Model for Helix-Coil-Sheet Transitions in Protein Systems

In view of the important role helix-sheet transitions play in protein aggregation, we introduce a simple model to study secondary structural transitions of helix-coil-sheet systems using a Potts model starting with an effective Hamiltonian. This energy function depends on four parameters that approximately describe entropic and enthalpic contributions to the stability of a polypeptide in helical and sheet conformations. The sheet structures involve long-range interactions between residues which are far in sequence, but are in contact in real space. Such contacts are included in the Hamiltonian. Using standard statistical mechanical techniques, the partition function is solved exactly using transfer matrices. Based on this model, we study thermodynamic properties of polypeptides, including phase transitions between helix, sheet, and coil structures.Comment: Updated version with correction

Color Magnitude Relation and Morphology of Low-Redshift ULIRGs in SDSS

We present color-magnitude and morphological analysis of 54 low-redshift ULIRGs, a subset of the IRAS 1Jy sample (Kim & Sanders, 1998), in the SDSS. The ULIRGs are on average 1 magnitude brighter in M0.1r than the SDSS galaxies within the same redshift range. The majority of the ULIRGs (~87%) have the colors typical of the blue cloud, and only 4 sources (~7%) are located in the red sequence. While ULIRGs are popularly thought to be precursors to a QSO phase, we find few (~6%) in the "green valley" where the majority of the X-ray and IR selected AGNs are found, and none of which harbors an AGN. For the 14 previously spectroscopic identified AGNs (~28%), we perform PSF subtractions and find that on average the central point sources contribute less than one third to the total luminosity, and that their high optical luminosities and overall blue colors are apparently the result of star formation activity of the host galaxies. Visual inspection of the SDSS images reveals a wide range of disturbed morphologies. A detailed morphology analysis using Gini and M20 coefficients shows that slightly less than one half (~42% in g band) of the ULIRGs are located in the region where most local mergers are found. The heterogeneous distribution of ULIRGs in the G-M20 space is qualitatively consistent with the results found by numerical simulations of disk-disk mergers. Our study also shows that the measured morphological parameters are systematically affected by the SNR and thus the merging galaxies can appear at various regions in the G-M20 space. In general, our results reinforce the view that ULIRGs contain young stellar populations and are mergers in progress. Our study provides a uniform comparison sample for studying ULIRGs at higher redshifts such as Spitzer mid-IR selected ULIRGs at z=1~2 and submm galaxies.Comment: 42 pages, 11 figures, ApJ accepte

Optical and transport gaps in gated bilayer graphene

We discuss the effect of disorder on the band gap measured in bilayer graphene in optical and transport experiments. By calculating the optical conductivity and density of states using a microscopic model in the presence of disorder, we demonstrate that the gap associated with transport experiments is smaller than that associated with optical experiments. Intrinsic bilayer graphene has an optical conductivity in which the energy of the peaks associated with the interband transition are very robust against disorder and thus provide an estimate of the band gap. In contrast, extraction of the band gap from the optical conductivity of extrinsic bilayer graphene is almost impossible for significant levels of disorder due to the ambiguity of the transition peaks. The density of states contains an upper bound on the gap measured in transport experiments, and disorder has the effect of reducing this gap which explains why these experiments have so far been unable to replicate the large band gaps seen in optical measurements.Comment: 5 pages, 5 figures, RevTeX. Published versio

The Scatter in the Relationship between Redshift and the Radio-to-Submm Spectral Index

We derive the scatter in the relationship between redshift and radio-to-submm spectral index, alpha^{350}_{1.4}, using the observed spectral energy distributions of 17 low redshift star forming galaxies. A mean galaxy model is derived, along with the rms scatter in alpha^{350}_{1.4}. The scatter is roughly constant with redshift. Constant rms scatter, combined with the flattening of the mean alpha^{350}_{1.4} -- z relationship with increasing redshift, leads to increasing uncertainty for redshift estimates at high redshifts. Normalizing by the dust temperature in the manner proposed by Blain decreases the scatter in alpha^{350}_{1.4} for most of the sample, but does not remove outliers, and free-free absorption at rest frequencies above 1.4 GHz is not likely to be a dominant cause for scatter in the alpha^{350}_{1.4} -- z relationship. We re-derive the cumulative redshift distribution of the 14 field galaxies in a recent submm and radio source sample of Smail et al.. The most likely median redshift for the distribution is 2.7, with a conservative lower limit of z = 2, as was also found by Smail et al. based on the original alpha^{350}_{1.4} -- z models. The normalization and shape of the redshift distribution for the faint submm sources are consistent with those expected for forming elliptical galaxies.Comment: Added Erratum, standard AAS LATEX forma

The Solar pp and hep Processes in Effective Field Theory

The strategy of modern effective field theory is exploited to pin down accurately the flux $S$ factors for the $pp$ and $hep$ processes in the Sun. The technique used is to combine the high accuracy established in few-nucleon systems of the "standard nuclear physics approach" (SNPA) and the systematic power counting of chiral perturbation theory (ChPT) into a consistent effective field theory framework. Using highly accurate wave functions obtained in the SNPA and working to \nlo3 in the chiral counting for the current, we make totally parameter-free and error-controlled predictions for the $pp$ and $hep$ processes in the Sun.Comment: 5 pages, aipproc macros are included. Talk given at International Nuclear Physics Conference 2001, Berkeley, California, July 30 - August 3, 200

Deformation of glass forming metallic liquids: Configurational changes and their relation to elastic softening

The change in the configurational enthalpy of metallic glass forming liquids induced by mechanical deformation and its effect on elastic softening is assessed. The acoustically measured shear modulus is found to decrease with increasing configurational enthalpy by a dependence similar to one obtained by softening via thermal annealing. This establishes that elastic softening is governed by a unique functional relationship between shear modulus and configurational enthalpy

Controlled and combined remote implementations of partially unknown quantum operations of multiqubits using GHZ states

We propose and prove protocols of controlled and combined remote implementations of partially unknown quantum operations belonging to the restricted sets [An Min Wang: PRA, \textbf{74}, 032317(2006)] using GHZ states. We detailedly describe the protocols in the cases of one qubit, respectively, with one controller and with two senders. Then we extend the protocols to the cases of multiqubits with many controllers and two senders. Because our protocols have to demand the controller(s)'s startup and authorization or two senders together working and cooperations, the controlled and combined remote implementations of quantum operations definitely can enhance the security of remote quantum information processing and potentially have more applications. Moreover, our protocol with two senders is helpful to farthest arrive at the power of remote implementations of quantum operations in theory since the different senders perhaps have different operational resources and different operational rights in practice.Comment: 26 pages, the submitted versio

Current-driven dynamics of chiral ferromagnetic domain walls

In most ferromagnets the magnetization rotates from one domain to the next with no preferred handedness. However, broken inversion symmetry can lift the chiral degeneracy, leading to topologically-rich spin textures such as spin-spirals and skyrmions via the Dzyaloshinskii-Moriya interaction (DMI). Here we show that in ultrathin metallic ferromagnets sandwiched between a heavy metal and an oxide, the DMI stabilizes chiral domain walls (DWs) whose spin texture enables extremely efficient current-driven motion. We show that spin torque from the spin Hall effect drives DWs in opposite directions in Pt/CoFe/MgO and Ta/CoFe/MgO, which can be explained only if the DWs assume a N\'eel configuration with left-handed chirality. We directly confirm the DW chirality and rigidity by examining current-driven DW dynamics with magnetic fields applied perpendicular and parallel to the spin spiral. This work resolves the origin of controversial experimental results and highlights a new path towards interfacial design of spintronic devices

Neutral Gas Properties and Lyα\alpha Escape in Extreme Green Pea Galaxies

Mechanisms regulating the escape of Ly$\alpha$ photons and ionizing radiation remain poorly understood. To study these processes we analyze VLA 21cm observations of one Green Pea (GP), J160810+352809 (hereafter J1608), and HST COS spectra of 17 GP galaxies at $z<0.2$. All are highly ionized: J1608 has the highest [O III] $\lambda5007$/[O II] $\lambda3727$ for star-forming galaxies in SDSS, and the 17 GPs have [O III]/[O II] $\geq6.6$. We set an upper limit on J1608's HI mass of $\log M_{HI}/M_\odot=8.4$, near or below average compared to similar mass dwarf galaxies. In the COS sample, eight GPs show Ly$\alpha$ absorption components, six of which also have Ly$\alpha$ emission. The HI column densities derived from Ly$\alpha$ absorption are high, $\log N_{HI}/$cm$^{-2}=19-21$, well above the LyC optically thick limit. Using low-ionization absorption lines, we measure covering fractions (f_{\mbox{cov}}) of $0.1-1$, and find that f_{\mbox{cov}} strongly anti-correlates with Ly$\alpha$ escape fraction. Low covering fractions may facilitate Ly$\alpha$ and LyC escape through dense neutral regions. GPs with f_{\mbox{cov}}\sim1 all have low neutral gas velocities, while GPs with lower f_{\mbox{cov}}=0.2-0.6 have a larger range of velocities. Conventional mechanical feedback may help establish low f_{\mbox{cov}} in some cases, whereas other processes may be important for GPs with low velocities. Finally, we compare f_{\mbox{cov}} with proposed indicators of LyC escape. Ionizing photon escape likely depends on a combination of neutral gas geometry and kinematics, complicating the use of emission-line diagnostics for identifying LyC emitters.Comment: 21 pages, 11 figures, accepted for publication in Ap