Streptomyces Secondary Metabolites

Actinobacteria are found spread widely in nature and particular attention is given to their role in the production of various bioactive secondary metabolites. Tests on soil samples show that there can be a diversity of actinomycetes depending on the climate, the area it is growing in, how dry the soil is, and the quality of the soil. However, it was agreed after tests in Yunnan, China, that the genus Streptomyces sp. is most important in ecological function, representing up to 90% of all soil actinomycetes, and therefore helping to show the important characteristics needed of the soil actinomycete population. Streptomycete compounds are used for other biological activities, not just for antibiotics. It has been found that metabolites can be broadly divided into four classes: (1) regulatory activities in compounds, these include consideration of growth factors, morphogenic agents and siderophores, and plants promoting rhizobia; (2) antagonistic agents, these include antiprotozoans, antibacterials, antifungals, as well as antivirals; (3) agrobiologicals, these include insecticides, pesticides, and herbicides; and (4) pharmacological agents, these include neurological agents, immunomodulators, antitumorals, and enzyme inhibitors. It is found that Streptomyces hygroscopicus is one of the very best examples because it secretes in excess of 180 secondary metabolites to locate simultaneous bioactivities for a given compound. Increasingly, both its agricultural and pharmacological screenings are being used in conjunction with antimicrobial tests and have revealed several unusual aerobiological and therapeutic agents, which were hitherto unknown for biological use as antibiotics. Since streptomycetes are now being used increasingly to screen for antimicrobial activity, reports show the existence of secondary metabolites with other activities that may have been missed. Currently, nearly 17% of biologically active secondary metabolites (nearly 7600 out of 43,000) are known from streptomycetes. It has been found that soil streptomycetes are the main source used by bioactive secondary metabolites. However, recently there have been many and varied types of structurally unique and biologically active secondary metabolites found and obtained from marine actinomycetes, including those from the genus Streptomyces. Also, compounds that are synthesized by streptomycetes exhibit extreme chemical diversity. Diverse form made from from simple amino acid derivatives to high molecular weight proteides, and macrolactones from simple eight membered lactones to different condensed macrolactones. Berdy (1974) introduced the first classification scheme for antibiotics referring to the chemical structure. On the basis of Berdy’s scheme, (1996) recognized that both low and high molecular weight compounds from 63 different chemical classes are produced by streptomycetes

Pathogenic and molecular detection of Fusarium oxysporum f. sp. albedinis isolates from different areas in southwest Algeria

Purpose: To investigate the intra-specific variations in eleven Fusarium oxysporum isolates from infected date palm using pathogenicity and molecular methods.Methods: Eleven isolates of Fusarium oxysporum obtained from infected date palms in the south-west region of Algeria were subjected to confirmatory test using a specific polymerase chain reaction (PCR) technique with the primer pairs, TL3-FOA28 and BIO3-FOA1. Polymorphism in the 5’ domain of the large subunit rRNA was investigated. Small libraries of the domain, amplified by the primer pair, LR3/LROR, were constructed and the inserts sequenced.Results: The 11 isolates of Fusarium oxysporum collected from the infected date palm were confirmed as Fusarium oxysporun f. sp albedinis. Results from the investigation of polymorphism in the 5’ domain of the large subunit rRNA revealed that the sequences were 100 % homologous or extremely close (> 99.4 %, differing by no more than one to three nucleotides) to several Fusarium oxysporum sequences. In addition, F. inflexum (U34548.1) was highly homologous to one of the F. oxysporum f. sp. albedinis.Conclusion: The sequences of the 11 isolates are almost 100 % homologous to several F. oxysporum species. It is noteworthy that a sequence highly homologous to one of the F. oxysporum f. sp. albedinis is obtainable from a different species, F. inflexum (U34548.1).Keywords:  Fusarium oxysporum f. sp. albedinis, Date palm, rRNA gene polymorphis

Genetic diversity of Verticillium dahliae isolates from olive trees in Algeria

Summary. Verticillium wilt of olive trees (Olea europaea L.), a wilt caused by the soil-borne fungus Verticillium dahliae (Kleb), is one of the most serious diseases in Algerian olive groves. To assess the pathogenic and genetic diversity of olive-infecting V. dahliae populations in Algeria, orchards from the two main olive-producing regions (north-western Algeria and Kabylia) were sampled and 27 V. dahliae isolates were recovered. For purposes of comparison, V. dahliae strains from France and Syria were added to the analysis. By means of PCR primers that specifically discriminate between defoliating (D) and non-defoliating (ND) V. dahliae pathotypes it was shown that all V. dahliae isolates belonged to the ND pathotype. The amount of genetic variation between the 43 isolates was assessed by random amplification of polymorphic DNA (RAPD). A total of 16 RAPD haplotypes were found on the basis of the presence or absence of 25 polymorphic DNA fragments. Genotypic diversity between the 27 Algerian isolates was low, with two RAPD haplotypes accounting for 70% of all isolates. Genotypic diversity was however greater between isolates from Kabylia than between isolates from north-western Algeria. Cluster analysis showed that most of the Algerian V. dahliae isolates grouped together with the French and Syrian isolates. On the basis of their ability to form heterokaryons with each other, a subset of 25 olive-pathogenic isolates was grouped into a single vegetative compatibility group (VCG). These results suggest that the olive-infecting V. dahliae populations in Algeria show limited diversity and that caution should be taken to prevent introduction of the D pathotype

Biocontrol of Chickpea Fusarium Wilt by Bacillus Spp. Rhizobacteria

Abstract: Among 131 rhizobacteria isolates, 29 potentially antagonistic strains were screened in in vitro assays. The five antagonistic Bacillus spp. Rb29, Rb6, Rb12, Rb4, and Rb15 showed the most inhibitory effect against FOC1 (from 25.63 to 71.11%), mycelial growth, and FOC2 (from 28.43 to 60.65%) in vitro. Results also revealed that production of volatile metabolite, components and inhibition of the test pathogen by volatile metabolites varied among different antagonistic rhizobacteria. Isolates Rb29, Rb6, Rb12, Rb4, and Rb15 produced more volatile metabolites which inhibited mycelial FOC growth by 40%. Chickpea Fusarium wilt severity caused by FOC1 was reduced from 60 to 99 % in the susceptible cultivar ILC 482 treated with antagonistic Bacillus spp. (Rb29, Rb6, Rb12, Rb4, and Rb15) in pot assays and by 98, 81, 68, 64, 57.20%, respectively, in the field trials. As for their beneficial effects on disease control, the results revealed that Bacillus spp. may improve plant growth and disease control