Accumulation and Expression of Multiple Antibiotic Resistance Genes in \u3ci\u3eArcobacter Cryaerophilus\u3c/i\u3e that Thrives in Sewage

We explored the bacterial diversity of untreated sewage influent samples of a wastewater treatment plant in Tucson, AZ and discovered that Arcobacter cryaerophilus, an emerging human pathogen of animal origin, was the most dominant bacterium. The other highly prevalent bacteria were members of the phyla Bacteroidetes and Firmicutes, which are major constituents of human gut microbiome, indicating that bacteria of human and animal origin intermingle in sewage. By assembling a near-complete genome of A. cryaerophilus, we show that the bacterium has accumulated a large number of antibiotic resistance genes (ARGs) probably enabling it to thrive in the wastewater. We also determined that a majority of ARGs was being expressed in sewage, suggestive of trace levels of antibiotics or other stresses that could act as a selective force that amplifies multidrug resistant bacteria in municipal sewage. Because all bacteria are not eliminated even after several rounds of wastewater treatment, ARGs in sewage could affect public health due to their potential to contaminate environmental water

Effect of mycorrhizal colonization and light limitation on growth and reproduction of lima bean (Phaseolus lunatus L.)

Plants can respond with sink stimulation of photosynthesis when colonized with fungal or bacterial root symbionts, compensating costs of carbohydrate allocation to the microbes. However, constraints may arise under light limitation when plants cannot extensively increase photosynthesis. We hypothesize that under such conditions the costs for maintaining the symbiosis outweigh the benefits, ultimately turning the mutualist microbes into parasites, resulting in reduced plant growth and reproduction. Using lima bean (Phaseolus lunatus) as experimental plant, we applied two levels of light (full light, 75% shading) and microbial inoculation (sterile soil, mycorrhizal fungi) and quantified both vegetative and generative plant traits. As expected, shaded plants produced less vegetative biomass and seeds than non-shaded plants. However, individual seeds were significantly heavier in shaded plants and required less time for germination. While under both light conditions mycorrhizal plants showed a significantly reduced belowground biomass, mycorrhizal fungi neither enhanced overall plants performance in terms of total biomass and seed production nor resulted in measurable costs in either light condition. Our study suggest that mycorrhizal colonization neither provided benefits to lima bean plants grown under full light, nor created costs when photosynthesis was limited

Finding the mechanism of wave energy flux damping in solar pores using numerical simulations

Context. Solar magnetic pores are, due to their concentrated magnetic fields, suitable guides for magnetoacoustic waves. Recent observations have shown that propagating energy flux in pores is subject to strong damping with height; however, the reason is still unclear. Aims. We investigate possible damping mechanisms numerically to explain the observations. Methods. We performed 2D numerical magnetohydrodynamic (MHD) simulations, starting from an equilibrium model of a single pore inspired by the observed properties. Energy was inserted into the bottom of the domain via different vertical drivers with a period of 30s. Simulations were performed with both ideal MHD and non-ideal effects. Results. While the analysis of the energy flux for ideal and non-ideal MHD simulations with a plane driver cannot reproduce the observed damping, the numerically predicted damping for a localized driver closely corresponds with the observations. The strong damping in simulations with localized driver was caused by two geometric effects, geometric spreading due to diverging field lines and lateral wave leakage.Comment: 12 pages (including appendix), 13 figures, accepted for publication by A&

Coxiella burnetii and Leishmania Mexicana Residing Within Similar Parasitophorous Vacuoles Elicit Disparate Host Responses

Coxiella burnetii is a bacterium that thrives in an acidic parasitophorous vacuole (PV) derived from lysosomes. Leishmania mexicana, a eukaryote, has also independently evolved to live in a morphologically similar PV. As Coxiella and Leishmania are highly divergent organisms that cause different diseases, we reasoned that their respective infections would likely elicit distinct host responses despite producing phenotypically similar parasite-containing vacuoles. The objective of this study was to investigate, at the molecular level, the macrophage response to each pathogen. Infection of THP-1 (human monocyte/macrophage) cells with Coxiella and Leishmania elicited disparate host responses. At 5 days post-infection, when compared to uninfected cells, 1057 genes were differentially expressed (746 genes up-regulated and 311 genes downregulated) in C. burnetii infected cells, whereas 698 genes (534 genes up-regulated and 164 genes down-regulated) were differentially expressed in L. mexicana infected cells. Interestingly, of the 1755 differentially expressed genes identified in this study, only 126 genes (∼7%) are common to both infections. We also discovered that 1090 genes produced mRNA isoforms at significantly different levels under the two infection conditions, suggesting that alternate proteins encoded by the same gene might have important roles in host response to each infection. Additionally, we detected 257 micro RNAs (miRNAs) that were expressed in THP-1 cells, and identified miRNAs that were specifically expressed during Coxiella or Leishmania infections. Collectively, this study identified host mRNAs and miRNAs that were influenced by Coxiella and/or Leishmania infections, and our data indicate that although their PVs are morphologically similar, Coxiella and Leishmania have evolved different strategies that perturb distinct host processes to create and thrive within their respective intracellular niches

Intraperitoneal Nanotherapy for Metastatic Ovarian Cancer Based on siRNA-Mediated Suppression of DJ-1 Protein Combined with a Low Dose of Cisplatin

Herein, we report an efficient combinatorial therapy for metastatic ovarian cancer based on siRNA-mediated suppression of DJ-1 protein combined with a low dose of cisplatin. DJ-1 protein modulates, either directly or indirectly, different oncogenic pathways that support and promote survival, growth, and invasion of ovarian cancer cells. To evaluate the potential of this novel therapy, we have engineered a cancer-targeted nanoplatform and validated that DJ-1 siRNA delivered by this nanoplatform after intraperitoneal injection efficiently downregulates the DJ-1 protein in metastatic ovarian cancer tumors and ascites. In vivo experiments revealed that DJ-1 siRNA monotherapy outperformed cisplatin alone by inhibiting tumor growth and increasing survival of mice with metastatic ovarian cancer. Finally, three cycles of siRNA-mediated DJ-1 therapy in combination with a low dose of cisplatin completely eradicated ovarian cancer tumors from the mice, and there was no cancer recurrence detected for the duration of the study, which lasted 35 weeks

Effect of Mycorrhizal Colonization and Light Limitation on Growth and Reproduction of Lima Bean (Phaseolus lunatus L.)

Plants can respond with sink stimulation of photosynthesis when colonized with fungal or bacterial root symbionts, compensating costs of carbohydrate allocation to the microbes. However, constraints may arise under light limitation when plants cannot extensively increase photosynthesis. We hypothesize that under such conditions the costs for maintaining the symbiosis outweigh the benefits, ultimately turning the mutualist microbes into parasites, resulting in reduced plant growth and reproduction. Using lima bean (Phaseolus lunatus) as experimental plant, we applied two levels of light (full light, 75% shading) and microbial inoculation (sterile soil, mycorrhizal fungi) and quantified both vegetative and generative plant traits. As expected, shaded plants produced less vegetative biomass and seeds than non-shaded plants. However, individual seeds were significantly heavier in shaded plants and required less time for germination. While under both light conditions mycorrhizal plants showed a significantly reduced belowground biomass, mycorrhizal fungi neither enhanced overall plants performance in terms of total biomass and seed production nor resulted in measurable costs in either light condition. Our study suggest that mycorrhizal colonization neither provided benefits to lima bean plants grown under full light, nor created costs when photosynthesis was limited

Effects of Light Limitation on Plant-­Rhizobia and Plant-Mycorrhiza Interactions

Plants respond with a sink stimulation of photosynthesis when colonized by bacterial and fungal mutualists, which compensates for costs of carbohydrate allocation to the microbes. Problems may arise when light is limited and plants cannot increase photosynthesis. We hypothesize that under such conditions the costs for maintaining the mutualism outweigh the benefits, which ultimately turns the beneficial microbes into parasites exploiting resources and reducing host fitness. We study these plant-­‐microbe interactions under different light availabilities using lima bean plants, rhizobia (nitrogen-­‐fixing bacteria), and mycorrhizal fungi. In our study, we apply two levels of light (full light and light intensity reduced by 75%) and four levels of microbial inoculation (sterile soil, rhizobia, mycorrhiza, and rhizobia x mycorrhiza). Fitness-­‐relevant plant parameters will be measured including plant vegetative growth as well as flower and seed production. Our study will provide first insights into potential shifts in functional interactions between plants and plant-­‐associated microbes under light limitation

Accumulation and expression of multiple antibiotic resistance genes in Arcobacter cryaerophilus that thrives in sewage

We explored the bacterial diversity of untreated sewage influent samples of a wastewater treatment plant in Tucson, AZ and discovered that Arcobacter cryaerophilus, an emerging human pathogen of animal origin, was the most dominant bacterium. The other highly prevalent bacteria were members of the phyla Bacteroidetes and Firmicutes, which are major constituents of human gut microbiome, indicating that bacteria of human and animal origin intermingle in sewage. By assembling a near-complete genome of A. cryaerophilus, we show that the bacterium has accumulated a large number of antibiotic resistance genes (ARGs) probably enabling it to thrive in the wastewater. We also determined that a majority of ARGs was being expressed in sewage, suggestive of trace levels of antibiotics or other stresses that could act as a selective force that amplifies multidrug resistant bacteria in municipal sewage. Because all bacteria are not eliminated even after several rounds of wastewater treatment, ARGs in sewage could affect public health due to their potential to contaminate environmental water

Modulation of Bacterial Fitness and Virulence Through Antisense RNAs

Regulatory RNAs contribute to gene expression control in bacteria. Antisense RNAs (asRNA) are a class of regulatory RNAs that are transcribed from opposite strands of their target genes. Typically, these untranslated transcripts bind to cognate mRNAs and rapidly regulate gene expression at the post-transcriptional level. In this article, we review asRNAs that modulate bacterial fitness and increase virulence. We chose examples that underscore the variety observed in nature including, plasmid- and chromosome-encoded asRNAs, a riboswitch-regulated as RNA, and as RNAs that require other RNAs or RNA binding proteins for stability and activity. We explore how as RNAs improve bacterial fitness and virulence by modulating plasmid acquisition and maintenance, regulating transposon mobility, increasing resistance against bacteriophages, controlling flagellar production, and regulating nutrient acquisition. We conclude with a brief discussion on how this knowledge is helping to inform current efforts to develop new therapeutics