Amplicon sequencing identified a putative pathogen, Macrophomina phaseolina, causing wilt in African eggplant (Solanum aethiopicum) grown in Tanzania and Uganda

African eggplant (Solanum aethiopicum L.) is one of the most common traditional vegetables in Tanzania and Uganda, but its productivity is severely affected by wilt diseases caused by a number of pathogens. Plant stem and root samples were collected in several fields from many neighboring diseased and healthy plants of the Gilo group in Tanzania and from the Shum group in Uganda to identify putative pathogens causing wilt on African eggplants. Through amplicon sequencing of sampled diseased and healthy tissues, we identified putative causal pathogens for the wilt symptoms. Wilting of S. aethiopicum in Uganda is most likely caused by the bacterial pathogen Ralstonia solanacearum whereas, in Tanzania, wilt is most likely caused by the fungal pathogen Macrophomina phaseolina, infecting roots. Infection of stems by Fusarium solani may also contribute to the wilt symptoms in Tanzania. Further artificial inoculation under controlled conditions confirmed that M. phaseolina can cause typical wilting symptoms on S. aethiopcium genotypes. The discovery of different putative causal agents of wilt in the crop demonstrates the need for site specific etiological analysis of wilt before developing and implementing effective control methods. Further research is needed to confirm the results and develop appropriate management measures against specific wilt pathogens

Performance of Solanum aethiopicum Shum group accessions under repetitive drought stress.

Drought is a serious climatic hazard to crop production, more especially when it occurs repeatedly. This created a need to identify repetitive drought tolerant varieties that recover following exposure to drought. Twenty accessions of Solanum aethiopicum Shum group were evaluated for their response to repeated drought exposure in a screen house at Uganda Christian University stressed and well-watered conditions in a split-plot arrangement. January, 2018.Drought is a serious climatic hazard to crop production, more especially when it occurs repeatedly. This created a need to identify repetitive drought tolerant varieties that recover following exposure to drought. Twenty accessions of Solanum aethiopicum Shum group were evaluated for their response to repeated drought exposure in a screen house at Uganda Christian University stressed and well-watered conditions in a split-plot arrangement. Data was collected on growth and yield parameters namely leaf area, plant canopy width, plant height, plant branching, fresh leaf weight, fresh shoot biomass, and harvest index. Exposure of plants to repetitive drought stress led to significant decrease in all evaluated growth parameters at p<0.001 except for plant branching. Similarly, yield parameters exhibited a highly significant difference among accessions and between water levels at p<0.001. Principal component analysis of growth rate traits showed that leaf area contributed to the highest variation for recovery from repetitive drought stress among accessions. The accessions that recovered best from drought stress include SAS108/2015, SAS163/P/2015, SAS183/G/2015, and SAS168/G/2015. For yield parameters, the accessions SAS137/2015, SAS148/2015, SAS108/P/2015, and SAS160/2015 had the highest dry shoot biomass. These findings indicate prospect for improvement of tolerance to repetitive drought stress in S. aethiopicum Shum group

Accuracy of using leaf blade length and leaf blade width measurements to calculate the leaf area of Solanum aethiopicum Shum group

Leaf area is an important parameter when determining growth response under normal as well as stressed environments. No attempt had been made to come up with an affordable but accurate alternative of measuring leaf size in research neglected leafy vegetable crops. Other techniques such as use of leaf area meters are either destructive, expensive or both. A study was conducted to determine leaf area in like-shaped leaves of research neglected crop plants, taking case of S. aethiopicum Shum group (SAS) germplasm. Data was collected on 552 individual plants (including pure lines and hybrids) at eight weeks after planting where a third fully open leaf from top of each plant was considered. Leaf blade length (LBL) and leaf blade width (LBW) were linearly measured while leaf area (LA) was measured using a leaf area meter. This was followed by correlation and regression analysis of LA with LBL, LBW, and LBL + LBW. Correlation coefficients at p < 0.001 ranged between 0.84 and 0.92, 0.79 and 0.88, 0.86 and 0.95 for total germplasm, pure lines and hybrids, respectively. The coefficient of determination (R2) ranged between 0.72 and 0.92. The best prediction for LA was obtained with hybrid plants (LA = -165.82 + 5.38LBL + 16.17LBW) at R2 of 92%. The implication is that we can accurately and affordably predict LA from duo measurements of LBL and LBW in SAS as well as in other crops having similar leaf shapes

Identification of growth stage specific watering thresholds for drought screening in Solanum aethiopicum Shum

This research article was published in Scientific Reports by Nature Research. It is available via DOI: https://doi.org/10.1038/s41598-020-58035-1Effective phenotyping for drought resistance is a pre-requisite for identification of modest crop varieties for farmers. For neglected and underutilized crops such as Solanum aethiopicum Shum group, no drought screening protocol based on rigorous iterations has been documented. A split-plot nested treatment structure was arranged in an experiment to identify growth stage-specific watering thresholds for this crop. Three plant growth stages (main plot; seedling, vegetative and flowering), watering regime at plant growth stage (2 regimes; well-watered and drought stressed) and day since last watering at plant growth stage were evaluated for soil moisture content (SMC), leaf wilting score (LWS), number of green leaves per plant (LPP) and leaf blade width (LBW). Highly significant differences (p < 0.001) were found at the different plant growth stages, watering regime (WR) within plant growth stage, and day within WR and plant growth stage. Under drought stress treatment, SMC declined exponentially at each stage. The earliest leaf wilting, reduction in LPP and LBW were generally observed at flowering followed by vegetative and slowest at the seedling stage. For future effective drought phenotyping studies in S. aethiopicum Shum and related crops, we recommend setting minimum drought stress treatments below 18% SMC at which the LWS is ≥2 at the vegetativeThis study was support by The World Academy of Sciences (TWAS), Grant Number 16-163 RG/BIO/AF/AC_I – FR3240293342 towards equipment for the project titled “Phenotyping water use efficiency in Solanum aethiopicum, Shum Group”. Co-funding was generous provided by the European Union through Forum for Agricultural Research in Africa (FARA) in a project ‘Enhancing nutrition security and incomes through adding value to indigenous vegetables in East and Central Uganda’ (FARA/PAEPARD-CRFII)

Farmer preferred traits and genotype choices in Solanum aethiopicum L., Shum group

Research articleBackground: Solanum aethiopicum L. is a nutrient dense African indigenous vegetable. However, advancement of its improved varieties that can increase productivity, household income, and food security has not been prioritized. Further still, studies on some of the crops that have been worked have indicated that it is not a guarantee that the improved varieties will be accepted by the end users and therefore there is need to identify and profile what genotypes are of interest to farmers and their preferred traits through inclusive participatory evaluations. Methodology: Farmer participatory evaluations were conducted to profile farmers’ traits of interest and preferred genotypes. A total of 24 genotypes were established in three replications in 6 farms in 3 districts; Wakiso, Mukono, and Luwero as these are the major producing districts of the vegetable in Uganda. A total of 177 sex-disaggregated farmers were engaged in scoring the genotypes for pest, disease and drought tolerance, general appeal, leaf yield, leaf texture, and seed yield for best 10 genotypes under each variable. Results: Non-significant differences in trait (p > 0.05) and genotype preferences (p > 0.05) were obtained between men and women. The most desired farmer traits were seed and leaf yield, followed by pest and disease resistance. The overall preferred genotype in terms of disease and pest resistance, leaf yield, leaf texture, and seed yield were E12 followed by E11. Conclusion: Gender does not seem to influence farmer choices for the S. aethiopicum, Shum group, indicating an opportunity for single variety prototype advancement by breeders and dissemination by seed companies

Farmers’ selection cues in cowpea for vegetable use in eastern Uganda

A participatory cowpea varietal selection was carried out in Eastern Uganda in Kumi district among farmers (n=30) in the sub-Counties of: Ongino, Kumi and Kanyum. A range of opinions were collected to identify farmers’ selection criteria based on different sensory attributes and their most preferred genotypes for vegetable use. A preference analysis was carried out to obtain quantitative preference scores of each plot. This was followed by organoleptic tests which included attributes like taste, aroma and texture of the genotypes at the vegetative and immature R4 stages. Focus group discussions (FGDs) were also held to find consensus of the independent evaluations made by individual farmers. Data for sixteen (16) cowpea genotypes were collected at the different above mentioned stages. Quantitative data were analyzed based on farmers’ scores made on the different evaluated attributes and ANOVA was used to provide mean differences between location, gender and genotype at a significant level of 5%. Preference score for each of the varieties tested was determined and presented. Data from FGDs were grouped, similarities and differences were later determined depending on their level of importance to the farmers. Significant differences (p<0.05) in farmer choices were observed for leaf taste, immature pod aroma, taste and texture; mature pod aroma, taste between farmer groups, age genotype and gender. Irrespective of age, gender, farmer group and genotype, farmers seemed to give more importance to the smooth texture, little hard leaves when chewing, sweet taste with a mild aroma (leaves) and a moderate aroma (pods). Majority (9%) of the farmers preferred Ebelat (landrace) at V4 stage; this was followed by Danila (8.7%). On the other hand, UCUCOW1 (13% at immature and 10.2% at mature cooked R4 stage) followed by Ebelat (9% and 9.8% for immature and mature R4 stage, respectively) were preferred by majority of the farmers. In terms of sensory attributes, farmers preferred genotypes with sweet taste, moderate aroma and tender texture. The information is a baseline for understanding key farmer selection criteria in utilization of cowpea as a vegetable which can be used in generating a demand-led variety design for the crop