Numeric data for each linkage group in the 2^nd generation linkage map for <i>Heterobasidion annosum s.l.</i>

a<p>Both groups contain mating type marker MAT-A.</p>b<p>Size of the assembled scaffold or chromosome corresponding to the respective linkage group.</p>c<p>Part of the assembled scaffold or chromosome covered by the respective linkage groupSupporting Information Legends.</p

Compared mapping data between 1^st and 2^nd<i>Heterobasidion annosum s.l.</i> linkage maps.

a<p>The part of the assembly covered after anchoring the 1^st generation map, calculated on the largest distance between the anchored markers of a linkage group, disregarding order among markers.</p

Haploid isolates of <i>Heterobasidion annosum</i> s.s. used in the study.

a<p>Single spore isolates from basidiospores or conidiospores.</p>b<p>Collectors: JS – J. Stenlid; KK – K. Korhonen; OH – O. Holdenrieder; PC – P. Capretti; IT – I. Thomsen.</p

Overview of four genomic regions significantly associated with <i>Heterobasidion</i> virulence in spruce and pine.

<p>The upper part of each figure plots the <i>p</i>-values (−log10 scale) for the four traits (up- and downstem combined) to the genomic position (in bp). Abbreviations: PFG, fungal growth in pine sapwood; PLL, lesion length in pine; SFG, fungal growth in spruce sapwood; SLL, lesion length in spruce. The lower part displays linkage disequilibrium (LD) heat maps. The heat map illustrates the LD value <i>r</i>² from white to red where red indicates high <i>r</i>² -values. Significant SNP markers are in red. (A) Contig 4128; (B) Contig 41480; (C) Contig 16590; (D) Contig 9600.</p

Data for the contigs with SNPs associated with virulence.

<p>Data for the contigs with SNPs associated with virulence.</p

Sequence data for the fungal isolates.

a<p>Percent aligned compared with total number of reads.</p>b<p>Coverage on reference sequence, Sä16-4, 90211-2 and W15 combined.</p>c<p>Paired-end sequenced isolates.</p

Overview of <i>p</i>-values (−log10 scale) for SNP associations to <i>Heterobasidion</i> virulence in spruce and pine.

<p>The <i>p</i>-values are plotted against the site number from the SNP extraction. The contigs with significant SNPs are indicated with orange lines. Abbreviations: PFG, fungal growth in pine sapwood; PLL, lesion length in pine; SFG, fungal growth in spruce sapwood; SLL, lesion length in spruce.</p

<i>Heterobasidion annosum s.s</i>. virulence analysis on <i>Picea abies</i> and <i>Pinus sylvestris</i>.

a<p>Isolates are sorted from low to high mean growth in sapwood of spruce.</p>b<p>Virulence was measured as lesion length and growth in sapwood up- and downstem from the wound combined in mm, ± s.d.</p>c<p>Number of successful infections out of 10.</p