Additional file 1: Figures S1–S5. of SETDB1 prevents TET2-dependent activation of IAP retroelements in naïve embryonic stem cells

Figure S1. SETDB1 regulates ERV silencing in naïve ESCs. Figure S2. Removal of TET2 dampens SETDB1-mediated IAP activation in naïve cells. Figure S3. SETDB1-mediated IAP activation is not linked to DNA methylation changes. Figure S4. SETDB1 depletion does not lead to DNA methylation changes. Figure S5. TET2 activity is associated with loss of H4R3me2s at IAPs. (PDF 828 kb

Additional file 2: Table S1. of SETDB1 prevents TET2-dependent activation of IAP retroelements in naĂŻve embryonic stem cells

List of differentially expressed repeat classes upon SETDB1 depletion. (XLSX 68 kb

Additional file 3: Table S2. of SETDB1 prevents TET2-dependent activation of IAP retroelements in naĂŻve embryonic stem cells

List of primers used in this study. (XLSX 52 kb

Additional file 1: of Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

An Excel spreadsheet with three tabs listing 1) datasets generated in this study, 2) datasets used from the publically domain, together with key parameters, and 3) number of datasets used per analysis. (XLSX 21 kb

Additional file 3: of Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

An Excel spreadsheet with reference genome compositions. (XLSX 269 kb

Additional file 2: of Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data

A PDF file with supplementary Tables S1–S3 and supplementary Figures S1–S10. (PDF 11655 kb