8 research outputs found

    mJSW and OA associated variants are co-localized with potential gene regulatory markers.

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    <p>We examined the epigenetic histone marks in Chondrogenic cells, osteoblasts, hMSC, K562, HUVEC, HeLA and NHEK cells. This heatmap of the percentage of variants in gene regulatory regions (enhancer/promoter associated regions) in high LD (r<sup>2</sup> >0.8) with lead GWAS SNP. Enrichment was calculated according [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1006260#pgen.1006260.ref025" target="_blank">25</a>].</p

    Manhattan plot for association of mJSW in the discovery phase.

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    <p>The -log10 P values, for each of the 2.5 million tests performed as part of the genome wide association of minimal joint space width of the hip (mJSW), plotted against their position per chromosome. Full results of the discovery GWAS are accessible through <a href="http://www.glimdna.org" target="_blank">www.glimdna.org</a>. The gray solid horizontal line corresponds to the genome-wide significant threshold (P = 5x10-8). The dotted grey line corresponds to the selection for replication threshold (P = 1x10<sup>-5</sup>).</p
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