1,198 research outputs found
Reggae to Rachmaninoff: How and Why People Participate in Arts and Culture
Provides the results of a telephone survey conducted to help inform those whose aim is to broaden and diversify cultural participation, and promote the role of arts and culture in strengthening American communities
Transposon and deletion mutagenesis of genes involved in perchlorate reduction in Azospira suillum PS.
UnlabelledAlthough much work on the biochemistry of the key enzymes of bacterial perchlorate reduction, chlorite dismutase, and perchlorate reductase has been published, understanding of the molecular mechanisms of this metabolism has been somewhat hampered by the lack of a clear model system amenable to genetic manipulation. Using transposon mutagenesis and clean deletions, genes important for perchlorate reduction in Azospira suillum PS have been identified both inside and outside the previously described perchlorate reduction genomic island (PRI). Transposon mutagenesis identified 18 insertions in 11 genes that completely abrogate growth via reduction of perchlorate but have no phenotype during denitrification. Of the mutants deficient in perchlorate reduction, 14 had insertions that were mapped to eight different genes within the PRI, highlighting its importance in this metabolism. To further explore the role of these genes, we also developed systems for constructing unmarked deletions and for complementing these deletions. Using these tools, every core gene in the PRI was systematically deleted; 8 of the 17 genes conserved in the PRI are essential for perchlorate respiration, including 3 genes that comprise a unique histidine kinase system. Interestingly, the other 9 genes in the PRI are not essential for perchlorate reduction and may thus have unknown functions during this metabolism. We present a model detailing our current understanding of perchlorate reduction that incorporates new concepts about this metabolism.ImportanceAlthough perchlorate is generated naturally in the environment, groundwater contamination is largely a result of industrial activity. Bacteria capable of respiring perchlorate and remediating contaminated water have been isolated, but relatively little is known about the biochemistry and genetics of this process. Here we used two complementary approaches to identify genes involved in perchlorate reduction. Most of these genes are located on a genomic island, which is potentially capable of moving between organisms. Some of the genes identified are known to be directly involved in the metabolism of perchlorate, but other new genes likely regulate the metabolism in response to environmental signals. This work has uncovered new questions about the regulation, energetics, and evolution of perchlorate reduction but also presents the tools to address them
Structure and evolution of chlorate reduction composite transposons.
UnlabelledThe genes for chlorate reduction in six bacterial strains were analyzed in order to gain insight into the metabolism. A newly isolated chlorate-reducing bacterium (Shewanella algae ACDC) and three previously isolated strains (Ideonella dechloratans, Pseudomonas sp. strain PK, and Dechloromarinus chlorophilus NSS) were genome sequenced and compared to published sequences (Alicycliphilus denitrificans BC plasmid pALIDE01 and Pseudomonas chloritidismutans AW-1). De novo assembly of genomes failed to join regions adjacent to genes involved in chlorate reduction, suggesting the presence of repeat regions. Using a bioinformatics approach and finishing PCRs to connect fragmented contigs, we discovered that chlorate reduction genes are flanked by insertion sequences, forming composite transposons in all four newly sequenced strains. These insertion sequences delineate regions with the potential to move horizontally and define a set of genes that may be important for chlorate reduction. In addition to core metabolic components, we have highlighted several such genes through comparative analysis and visualization. Phylogenetic analysis places chlorate reductase within a functionally diverse clade of type II dimethyl sulfoxide (DMSO) reductases, part of a larger family of enzymes with reactivity toward chlorate. Nucleotide-level forensics of regions surrounding chlorite dismutase (cld), as well as its phylogenetic clustering in a betaproteobacterial Cld clade, indicate that cld has been mobilized at least once from a perchlorate reducer to build chlorate respiration.ImportanceGenome sequencing has identified, for the first time, chlorate reduction composite transposons. These transposons are constructed with flanking insertion sequences that differ in type and orientation between organisms, indicating that this mobile element has formed multiple times and is important for dissemination. Apart from core metabolic enzymes, very little is known about the genetic factors involved in chlorate reduction. Comparative analysis has identified several genes that may also be important, but the relative absence of accessory genes suggests that this mobile metabolism relies on host systems for electron transport, regulation, and cofactor synthesis. Phylogenetic analysis of Cld and ClrA provides support for the hypothesis that chlorate reduction was built multiple times from type II dimethyl sulfoxide (DMSO) reductases and cld. In at least one case, cld has been coopted from a perchlorate reduction island for this purpose. This work is a significant step toward understanding the genetics and evolution of chlorate reduction
Community Partnerships for Cultural Participation: Concepts, Prospects, and Challenges
Evaluates the first year of the Wallace Foundation's Community Partnerships for Cultural Participation Initiative, which funded nine community foundations working to increase participation in the arts and culture in their communities
Star Formation in Nearby Isolated Galaxies
We use the FUV fluxes measured with the GALEX to study the star formation
properties of galaxies collected in the "Local Orphan Galaxies" catalog (LOG).
Among 517 LOG galaxies having radial velocities V(LG) < 3500 km/s and Galactic
latitudes |b|> 15 degr, 428 objects have been detected in FUV. We briefly
discuss some scaling relations between the specific star formation rate (SSFR)
and stellar mass, HI-mass, morphology, and surface brightness of galaxies
situated in extremely low density regions of the Local Supercluster. Our sample
is populated with predominantly late-type, gas-rich objects with the median
morphological type of Sdm. Only 5% of LOG galaxies are classified as early
types: E, S0, S0/a, however, they systematically differ from normal E and S0
galaxies by lower luminosity and presence of gas and dust. We find that almost
all galaxies in our sample have their SSFR below 0.4 [Gyr^{-1}]. This limit is
also true even for a sample of 260 active star-burst Markarian galaxies
situated in the same volume. The existence of such a quasi-Eddington limit for
galaxies seems to be a key factor which characterizes the transformation of gas
into stars at the current epoch.Comment: 10 pages, 8 figures, 3 table
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