GBTrans: A commensal search for radio pulses with the Green Bank twenty metre telescope

We describe GBTrans, a real-time search system designed to find fast radio bursts (FRBs) using the 20-m radio telescope at the Green Bank Observatory. The telescope has been part of the Skynet educational program since 2015. We give details of the observing system and report on the non-detection of FRBs from a total observing time of 503 days. Single pulses from four known pulsars were detected as part of the commensal observing. The system is sensitive enough to detect approximately half of all currently known FRBs and we estimate that our survey probed redshifts out to about 0.3 corresponding to an effective survey volume of around 124,000~Mpc$^3$. Modeling the FRB rate as a function of fluence, $F$, as a power law with $F^{-\alpha}$, we constrain the index $\alpha < 2.5$ at the 90% confidence level. We discuss the implications of this result in the context of constraints from other FRB surveys.Comment: 7 pages, 6 figure

Catalog of 93 Nova Light Curves: Classification and Properties

We present a catalog of 93 very-well-observed nova light curves. The light curves were constructed from 229,796 individual measured magnitudes, with the median coverage extending to 8.0 mag below peak and 26% of the light curves following the eruption all the way to quiescence. Our time-binned light curves are presented in figures and as complete tabulations. We also calculate and tabulate many properties about the light curves, including peak magnitudes and dates, times to decline by 2, 3, 6, and 9 magnitudes from maximum, the time until the brightness returns to quiescence, the quiescent magnitude, power law indices of the decline rates throughout the eruption, the break times in this decline, plus many more properties specific to each nova class. We present a classification system for nova light curves based on the shape and the time to decline by 3 magnitudes from peak (t3). The designations are S for smooth light curves (38% of the novae), P for plateaus (21%), D for dust dips (18%), C for cusp-shaped secondary maxima (1%), O for quasi-sinusoidal oscillations superposed on an otherwise smooth decline (4%), F for flat-topped light curves (2%), and J for jitters or flares superposed on the decline (16%). Our classification consists of this single letter followed by the t3 value in parentheses; so for example V1500 Cyg is S(4), GK Per is O(13), DQ Her is D(100), and U Sco is P(3).Comment: Astronomical Journal, in press, 19 figures, 73 page

Deterioration of perennial sea ice in the Beaufort Gyre from 2003 to 2012 and its impact on the oceanic freshwater cycle

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Geophysical Research: Oceans 119 (2014): 1271-1305, doi:10.1002/2013JC008999.Time series of ice draft from 2003 to 2012 from moored sonar data are used to investigate variability and describe the reduction of the perennial sea ice cover in the Beaufort Gyre (BG), culminating in the extreme minimum in 2012. Negative trends in median ice drafts and most ice fractions are observed, while open water and thinnest ice fractions (<0.3 m) have increased, attesting to the ablation or removal of the older sea ice from the BG over the 9 year period. Monthly anomalies indicate a shift occurred toward thinner ice after 2007, in which the thicker ice evident at the northern stations was reduced. Differences in the ice characteristics between all of the stations also diminished, so that the ice cover throughout the region became statistically homogenous. The moored data are used in a relationship with satellite radiometer data to estimate ice volume changes throughout the BG. Summer solid fresh water content decreased drastically in consecutive years from 730 km3 in 2006 to 570 km3 in 2007, and to 240 km3 in 2008. After a short rebound, solid fresh water fell below 220 km3 in 2012. Meanwhile, hydrographic data indicate that liquid fresh water in the BG in summer increased 5410 km3 from 2003 to 2010 and decreased at least 210 km3 by 2012. The reduction of both solid and liquid fresh water components indicates a net export of approximately 320 km3 of fresh water from the region occurred between 2010 and 2012, suggesting that the anticyclonic atmosphere-ocean circulation has weakened.Support for Krishfield, Proshutinsky, and Timmermans, partial financial support of logistics, hydrographic observations on the board of Canadian icebreaker, and full financial coverage of all mooring instrumentation was provided by the National Science Foundation (under grants OPP-0230184, OPP-0424864, ARC-0722694, ARC-0806306, ARC- 0856531, ARC-1107277, and ARC- 1203720), and Woods Hole Oceanographic Institution internal funding. Funding for Tateyama was provided by the International Arctic Research Center – Japan Aerospace Exploration Agency (IJIS) Arctic project, and for Williams, Carmack, and McLaughlin by Fisheries and Oceans Canada

Deterioration of perennial sea ice in the Beaufort Gyre from 2003 to 2012 and its impact on the oceanic freshwater cycle

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Geophysical Research: Oceans 119 (2014): 1271-1305, doi:10.1002/2013JC008999.Time series of ice draft from 2003 to 2012 from moored sonar data are used to investigate variability and describe the reduction of the perennial sea ice cover in the Beaufort Gyre (BG), culminating in the extreme minimum in 2012. Negative trends in median ice drafts and most ice fractions are observed, while open water and thinnest ice fractions (<0.3 m) have increased, attesting to the ablation or removal of the older sea ice from the BG over the 9 year period. Monthly anomalies indicate a shift occurred toward thinner ice after 2007, in which the thicker ice evident at the northern stations was reduced. Differences in the ice characteristics between all of the stations also diminished, so that the ice cover throughout the region became statistically homogenous. The moored data are used in a relationship with satellite radiometer data to estimate ice volume changes throughout the BG. Summer solid fresh water content decreased drastically in consecutive years from 730 km3 in 2006 to 570 km3 in 2007, and to 240 km3 in 2008. After a short rebound, solid fresh water fell below 220 km3 in 2012. Meanwhile, hydrographic data indicate that liquid fresh water in the BG in summer increased 5410 km3 from 2003 to 2010 and decreased at least 210 km3 by 2012. The reduction of both solid and liquid fresh water components indicates a net export of approximately 320 km3 of fresh water from the region occurred between 2010 and 2012, suggesting that the anticyclonic atmosphere-ocean circulation has weakened.Support for Krishfield, Proshutinsky, and Timmermans, partial financial support of logistics, hydrographic observations on the board of Canadian icebreaker, and full financial coverage of all mooring instrumentation was provided by the National Science Foundation (under grants OPP-0230184, OPP-0424864, ARC-0722694, ARC-0806306, ARC- 0856531, ARC-1107277, and ARC- 1203720), and Woods Hole Oceanographic Institution internal funding. Funding for Tateyama was provided by the International Arctic Research Center – Japan Aerospace Exploration Agency (IJIS) Arctic project, and for Williams, Carmack, and McLaughlin by Fisheries and Oceans Canada

Turbidimetric Determination of Anionic Polyacrylamide in Low Carbon Soil Extracts

Concerns over runoff water quality from agricultural lands and construction sites have led to the development of improved erosion control practices, including application of polyacrylamide (PAM). We developed a quick and reliable method for quantifying PAM in soil extracts at low carbon content by using a turbidimetric reagent, Hyamine 1622. Three high-molecular weight anionic PAMs differing in charge density (7, 20, and 50 mol%) and five water matrices, deionized (DI) water and extracts from four different soils, were used to construct PAM calibration curves by reacting PAM solutions with hyamine and measuring turbidity development from the PAM–hyamine complex. The PAM calibration curve with DI water showed a strong linear relationship (r2 = 0.99), and the sensitivity (slope) of calibration curves increased with increasing PAM charge density with a detection limit of 0.4 to 0.9 mg L−1. Identical tests with soil extracts showed the sensitivity of the hyamine method was dependent on the properties of the soil extract, primarily organic carbon concentration. Although the method was effective in mineral soils, the highest charge density PAM yielded a more reliable linear relationship (r2 \u3e 0.97) and lowest detection limit (0.3 to 1.2 mg L−1), compared with those of the lower charge density PAMs (0.7 to 23 mg L−1). Our results suggest that the hyamine test could be an efficient method for quantifying PAM in environmental soil water samples as long as the organic carbon in the sample is low, such as in subsurface soil material often exposed at construction sites

Extracellular Localisation of the C-Terminus of DDX4 Confirmed by Immunocytochemistry and Fluorescence-Activated Cell Sorting

Putative oogonial stem cells (OSCs) have been isolated by fluorescence-activated cell sorting (FACS) from adult human ovarian tissue using an antibody against DEAD-box helicase 4 (DDX4). DDX4 has been reported to be germ cell specific within the gonads and localised intracellularly. White et al. (2012) hypothesised that the C-terminus of DDX4 is localised on the surface of putative OSCs but is internalised during the process of oogenesis. This hypothesis is controversial since it is assumed that RNA helicases function intracellularly with no extracellular expression. To determine whether the C-terminus of DDX4 could be expressed on the cell surface, we generated a novel expression construct to express full-length DDX4 as a DsRed2 fusion protein with unique C- and N-terminal epitope tags. DDX4 and the C-terminal myc tag were detected at the cell surface by immunocytochemistry and FACS of non-permeabilised human embryonic kidney HEK 293T cells transfected with the DDX4 construct. DDX4 mRNA expression was detected in the DDX4-positive sorted cells by RT-PCR. This study clearly demonstrates that the C-terminus of DDX4 can be expressed on the cell surface despite its lack of a conventional membrane-targeting or secretory sequence. These results validate the use of antibody-based FACS to isolate DDX4-positive putative OSCs

The rapid response of the Canada Basin to climate forcing : from bellwether to alarm bells

Author Posting. © Oceanography Society, 2011. This article is posted here by permission of Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 24 no. 3 (2011): 146–159, doi:10.5670/oceanog.2011.66.Sea ice extent in the Arctic Ocean diminished significantly during the first decade of the 2000s, most particularly in the Canada Basin where the loss of both multiyear and first-year ice was greater than in the other three subbasins. Using data collected during basin-wide surveys conducted from 2003–2010 together with data collected during the 1990s and 2000s at one station in the southern Canada Basin, we investigate the response of the Canada Basin water column to this significant decrease in ice cover. Changes were evident from the surface down to the Atlantic layer: some changes were the result of Beaufort Gyre forcing on regional processes, others were the result of Arctic Ocean atmospheric forcing on a hemispheric scale and large-scale advection. These changes have troubling consequences for the ecosystem.We acknowledge support from Fisheries and Oceans Canada, the US National Science Foundation Office of Polar Programs (grant OPP-0424864), and the Canadian International Polar Year office

Beaufort Gyre freshwater reservoir : state and variability from observations

Author Posting. © American Geophysical Union, 2009. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 114 (2009): C00A10, doi:10.1029/2008JC005104.We investigate basin-scale mechanisms regulating anomalies in freshwater content (FWC) in the Beaufort Gyre (BG) of the Arctic Ocean using historical observations and data collected in 2003–2007. Specifically, the mean annual cycle and interannual and decadal FWC variability are explored. The major cause of the large FWC in the BG is the process of Ekman pumping (EP) due to the Arctic High anticyclonic circulation centered in the BG. The mean seasonal cycle of liquid FWC is a result of interplay between the mechanical (EP) and thermal (ice transformations) factors and has two peaks. One peak occurs around June–July when the sea ice thickness reaches its minimum (maximum ice melt). The second maximum is observed in November–January when wind curl is strongest (maximum EP) and the salt input from the growing ice has not yet reached its maximum. Interannual changes in FWC during 2003–2007 are characterized by a strong positive trend in the region varying by location with a maximum of approximately 170 cm a−1 in the center of EP influenced region. Decadal FWC variability in the period 1950–2000 is dominated by a significant change in the 1990s forced by an atmospheric circulation regime change. The center of maximum FWC shifted to the southeast and appeared to contract in area relative to the pre-1990s climatology. In spite of the areal reduction, the spatially integrated FWC increased by over 1000 km3 relative to climatology.The funding for Andrey Proshutinsky, Richard Krishfield, John Toole, and Mary-Louise Timmermans (partial financial support of logistics, hydrographic observations on the board of Canadian icebreaker, and full financial coverage of all mooring instrumentation) was provided by the National Science Foundation (under grants ARC- 0806115, ARC-0631951, and ARC-0806306) and Woods Hole Oceanographic Institution internal funding

Selective chemical probe inhibitor of Stat3, identified through structure-based virtual screening, induces antitumor activity

S31-201 (NSC 74859) is a chemical probe inhibitor of Stat3 activity, which was identified from the National Cancer Institute chemical libraries by using structure-based virtual screening with a computer model of the Stat3 SH2 domain bound to its Stat3 phosphotyrosine peptide derived from the x-ray crystal structure of the Stat3 beta homodimer. S31-201 inhibits Stat3-Stat3 complex formation and Stat3 DNA-binding and transcriptional activities. Furthermore, S31-201 inhibits growth and induces apoptosis preferentially in tumor cells that contain persistently activated Stat3. Constitutively climerized and active Stat3C and Stat3 SH2 domain rescue tumor cells from S31-201-induced apoptosis. Finally, S31-201 inhibits the expression of the Stat3-regulated genes encoding cyclin D1, BcI-xL, and survivin and inhibits the growth of human breast tumors in vivo. These findings strongly suggest that the antitumor activity of S31-201 is mediated in part through inhibition of aberrant Stat3 activation and provide the proof-of-concept for the potential clinical use of Stat3 inhibitors such as S31-201 in tumors harboring aberrant Stat3