Genome sequence of canine herpesvirus

Canine herpesvirus is a widespread alphaherpesvirus that causes a fatal haemorrhagic disease of neonatal puppies. We have used high-throughput methods to determine the genome sequences of three viral strains (0194, V777 and V1154) isolated in the United Kingdom between 1985 and 2000. The sequences are very closely related to each other. The canine herpesvirus genome is estimated to be 125 kbp in size and consists of a unique long sequence (97.5 kbp) and a unique short sequence (7.7 kbp) that are each flanked by terminal and internal inverted repeats (38 bp and 10.0 kbp, respectively). The overall nucleotide composition is 31.6% G+C, which is the lowest among the completely sequenced alphaherpesviruses. The genome contains 76 open reading frames predicted to encode functional proteins, all of which have counterparts in other alphaherpesviruses. The availability of the sequences will facilitate future research on the diagnosis and treatment of canine herpesvirus-associated disease

Helmholtz solitons in optical materials with a dual power-law refractive index

A nonlinear Helmholtz equation is proposed for modelling scalar optical beams in uniform planar waveguides whose refractive index exhibits a purely-focusing dual powerlaw dependence on the electric field amplitude. Two families of exact analytical solitons, describing forward- and backward-propagating beams, are derived. These solutions are physically and mathematically distinct from those recently discovered for related nonlinearities. The geometry of the new solitons is examined, conservation laws are reported, and classic paraxial predictions are recovered in a simultaneous multiple limit. Conventional semi-analytical techniques assist in studying the stability of these nonparaxial solitons, whose propagation properties are investigated through extensive simulations

Anomalous diffusion, clustering, and pinch of impurities in plasma edge turbulence

The turbulent transport of impurity particles in plasma edge turbulence is investigated. The impurities are modeled as a passive fluid advected by the electric and polarization drifts, while the ambient plasma turbulence is modeled using the two-dimensional Hasegawa--Wakatani paradigm for resistive drift-wave turbulence. The features of the turbulent transport of impurities are investigated by numerical simulations using a novel code that applies semi-Lagrangian pseudospectral schemes. The diffusive character of the turbulent transport of ideal impurities is demonstrated by relative-diffusion analysis of the evolution of impurity puffs. Additional effects appear for inertial impurities as a consequence of compressibility. First, the density of inertial impurities is found to correlate with the vorticity of the electric drift velocity, that is, impurities cluster in vortices of a precise orientation determined by the charge of the impurity particles. Second, a radial pinch scaling linearly with the mass--charge ratio of the impurities is discovered. Theoretical explanation for these observations is obtained by analysis of the model equations.Comment: This article has been submitted to Physics of Plasmas. After it is published, it will be found at http://pop.aip.org/pop

Angular dependent magnetothermopower of alpha-(ET)2KHg(SCN)4

The magnetic field and angular dependencies of the thermopower and Nernst effect of the quasi-two-dimensional organic conductor alpha-(ET)2KHg(SCN)4 are experimentally measured at temperatures below (4 K) and above (9 K) the transition temperature to fields of In addition, a theoretical model which involves a magnetic breakdown effect between the q1D and q2D bands is proposed in order to simulate the data. Analysis of the background components of the thermopower and Nernst effect imply that at low temperatures, in the CDW state, the properties of alpha-(ET)2KHg(SCN)4 are determined mostly by the orbits on the new open Fermi sheets. Quantum oscillations observed in the both thermoelectric effects, at fields above 8 T, originate only from the alpha orbit.Comment: 25 pages, 18 figure

Formulation Enhanced Transport of a Soil Applied Herbicide

Because pesticides are applied as formulated particles and the affinity of the active ingredient for the formulation is higher than for the bulk water, we hypothesized that a formulation complex could affect active ingredient transport. Our objectives were to investigate the nature and extent of surfactant-atrazine-clay/oxide surface interactions. When atrazine and an anionic surfactant were dried onto plain or Fe-coated sand and leached, atrazine concentrations in the initial leachate were lower in the Fe-coated sand treatment. This was likely due to an electrostatic attraction between the sand and surfactant. When a nonionic surfactant was used, atrazine concentration in the initial leachate was lower through plain sand. This suggests that the affinity of the nonionic surfactant for the Fe-surface is lower than for the silica surface. Using FTIR spectroscopy we have determined that a nonionic surfactant and atrazine will partition into the interlayer of montmorillonite. Atrazine in the interlayer has important implications for herbicide mass transport. The desorption of atrazine will be diffusion controlled and hence less atrazine should be available for transport. However, should these clays become dispersed, they could act as a suspended, highly mobile phase for the particulate transport of atrazine

Cosmic ray energy changes at the termination shock and in the heliosheath

Voyager 1 crossed the termination shock of the solar wind in December 2004 at 94 AU and currently measures the cosmic ray intensity in the heliosheath. To better understand this modulation region beyond the shock, where adiabatic energy changes should be small, we review the net effect of energy changes during the modulation process, including adiabatic deceleration in the solar wind, acceleration at the termination shock, and the possibility that stochastic acceleration in the heliosheath may also make a contribution

Classical and quantum chaos in a circular billiard with a straight cut

We study classical and quantum dynamics of a particle in a circular billiard with a straight cut. This system can be integrable, nonintegrable with soft chaos, or nonintegrable with hard chaos, as we vary the size of the cut. We use a quantum web to show differences in the quantum manifestations of classical chaos for these three different regimes.Comment: LaTeX2e, 8 pages including 3 Postscript figures and 4 GIF figures, submitted to Phys. Rev.

Chaos and Quantum Thermalization

We show that a bounded, isolated quantum system of many particles in a specific initial state will approach thermal equilibrium if the energy eigenfunctions which are superposed to form that state obey {\it Berry's conjecture}. Berry's conjecture is expected to hold only if the corresponding classical system is chaotic, and essentially states that the energy eigenfunctions behave as if they were gaussian random variables. We review the existing evidence, and show that previously neglected effects substantially strengthen the case for Berry's conjecture. We study a rarefied hard-sphere gas as an explicit example of a many-body system which is known to be classically chaotic, and show that an energy eigenstate which obeys Berry's conjecture predicts a Maxwell--Boltzmann, Bose--Einstein, or Fermi--Dirac distribution for the momentum of each constituent particle, depending on whether the wave functions are taken to be nonsymmetric, completely symmetric, or completely antisymmetric functions of the positions of the particles. We call this phenomenon {\it eigenstate thermalization}. We show that a generic initial state will approach thermal equilibrium at least as fast as $O(\hbar/\Delta)t^{-1}$, where $\Delta$ is the uncertainty in the total energy of the gas. This result holds for an individual initial state; in contrast to the classical theory, no averaging over an ensemble of initial states is needed. We argue that these results constitute a new foundation for quantum statistical mechanics.Comment: 28 pages in Plain TeX plus 2 uuencoded PS figures (included); minor corrections only, this version will be published in Phys. Rev. E; UCSB-TH-94-1

Vacuum Stability, Perturbativity, and Scalar Singlet Dark Matter

We analyze the one-loop vacuum stability and perturbativity bounds on a singlet extension of the Standard Model (SM) scalar sector containing a scalar dark matter candidate. We show that the presence of the singlet-doublet quartic interaction relaxes the vacuum stability lower bound on the SM Higgs mass as a function of the cutoff and lowers the corresponding upper bound based on perturbativity considerations. We also find that vacuum stability requirements may place a lower bound on the singlet dark matter mass for given singlet quartic self coupling, leading to restrictions on the parameter space consistent with the observed relic density. We argue that discovery of a light singlet scalar dark matter particle could provide indirect information on the singlet quartic self-coupling.Comment: 25 pages, 10 figures; v2 - fixed minor typos; v3 - added to text discussions of other references, changed coloring of figures for easier black and white viewin