9 research outputs found

    Monocyte subset proportions at baseline and after ART initiation compared to proportions among controls.

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    <p>(A) Jitterplot comparing the subset proportions in HIV-1-infected individuals prior to ART initiation and subset proportions in controls. Medians are shown, and p values were determined using Mann Whitney U tests. Figs B-D display Tukey boxplots of medians and interquartile ranges. Outliers are shown as open circles. Tukey boxplots show the proportions of traditional monocytes (B), inflammatory monocytes (C) and patrolling monocytes (D) in controls (red) and in HIV-1-infected subjects at baseline and over the course of 48 weeks of ART.</p

    Gating strategy for flow cytometry and comparison between fresh and cryopreserved monocyte surface marker expression.

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    <p>(A) Shown are isotype control dot plots and CD14 and CD16 expression in freshly obtained and cryopreserved PBMC from the same healthy volunteer and the expression of CX3CR1 on each monocyte subset in the cryopreserved sample. Monocyte subsets were gated using the isotype staining as a guide, as seen in the farthest left panel. Traditional monocytes are in purple, inflammatory monocytes are in pink, patrolling monocytes are in green. Gates are drawn based on negative isotype staining using Rat IgG2b, in the case of CX3CR1. (B) Summary surface marker expression, both proportion and MFI, in fresh and cryopreserved PBMCs on total monocytes of healthy control subjects, with medians, are shown. Each shape (triangle, square, diamond, and circle) represents an individual healthy control subject. (C) Summary surface marker expression, both proportion and MFI, in fresh and cryopreserved PBMCs on total monocytes of virologically suppressed HIV-infected subjects, with medians, are shown. Each shape (triangle, square, diamond, and circle) represents an individual HIV-infected subject.</p

    Alterations in surface marker density on total monocytes and monocyte subsets of HIV-1-infected patients before and after initiation of ART.

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    <p>Baseline MFI values are italicized if significantly greater than among uninfected controls and boldedif significantly lower by Mann Whitney U tests. Comparisons were made between week 12 and baseline (0–12), week 24 and baseline (0–24), and week 48 and baseline (0–48) using both Wilcoxon signed rank test and the generalized estimating equation. Significant increases (p<0.05) are italicized and significant decreases are bolded. Robust Z score for the GEE plot are included to aid in the understanding of the direction of the change; negative Z score indicates decreased values after ART initiation and positive Z scores indicate increased values after ART initiation</p><p>Alterations in surface marker density on total monocytes and monocyte subsets of HIV-1-infected patients before and after initiation of ART.</p

    Alterations in frequencies of surface marker expression on total monocytes and monocyte subsets of HIV-1-infected patients before and after initiation of ART.

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    <p>Baseline proportions are italicized if significantly greater than among uninfected controls and bolded if significantly lower by Mann Whitney U tests. Comparisons were made between week 12 and baseline (0–12), week 24 and baseline (0–24), and week 48 and baseline (0–48) using both Wilcoxon signed rank test and the generalized estimating equation. Significant increases (p<0.05) are italicized and significant decreases are bolded. Robust Z score for the GEE plot are included to aid in the understanding of the direction of the change; negative Z score indicates decreased values after ART initiation and positive Z scores indicate increased values after ART initiation.</p><p>Alterations in frequencies of surface marker expression on total monocytes and monocyte subsets of HIV-1-infected patients before and after initiation of ART.</p

    Patient characteristics.

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    <p>HIV-1-infected patients are from the A5248 cohort and controls were taken from a cohort of uninfected persons with at least two cardiovascular disease risk factors.</p><p>Patient characteristics.</p

    Systems biology of vaccination for seasonal influenza in humans.

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    Here we have used a systems biology approach to study innate and adaptive responses to vaccination against influenza in humans during three consecutive influenza seasons. We studied healthy adults vaccinated with trivalent inactivated influenza vaccine (TIV) or live attenuated influenza vaccine (LAIV). TIV induced higher antibody titers and more plasmablasts than LAIV did. In subjects vaccinated with TIV, early molecular signatures correlated with and could be used to accurately predict later antibody titers in two independent trials. Notably, expression of the kinase CaMKIV at day 3 was inversely correlated with later antibody titers. Vaccination of CaMKIV-deficient mice with TIV induced enhanced antigen-specific antibody titers, which demonstrated an unappreciated role for CaMKIV in the regulation of antibody responses. Thus, systems approaches can be used to predict immunogenicity and provide new mechanistic insights about vaccines
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