Additional file 7: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S6. AD-risk SNPs that overlap microglia ATAC-seq peaks. (XLSX 12 kb

Additional file 1: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S1. Enrichment of AD-risk variants at DHSs from Roadmap Epigenomics Consortium data. (XLSX 36 kb

Additional file 3: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S3. Enrichment of AD-risk variants at H3K4me1 peaks from Roadmap Epigenomics Consortium data. (XLSX 56 kb

Additional file 9: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S8. Results from the de novo motif analysis performed using HOMER on microglia ATAC-seq peaks. (XLSX 10 kb

Additional file 4: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S4. Enrichment of AD-risk variants at H4K3me3 peaks from Roadmap Epigenomics Consortium data. (XLSX 48 kb

Additional file 6: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Figure S1. Open chromatin regions (OCRs) identified in macrophages and microglia at Alzheimer’s disease risk loci containing the genes BIN1 and CASS4. Figure S2. Overlap between Alzheimer’s disease risk loci and genomic regions bound by SPI1 in human ex vivo microglia. (PDF 595 kb

Additional file 5: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S5. AD-risk SNPs overlapping macrophage DHS. (XLSX 10 kb

Additional file 8: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S7. Results from the de novo motif analysis performed using HOMER on the macrophage DHS. (XLSX 10 kb

Additional file 10: of Genetic risk for Alzheimer’s disease is concentrated in specific macrophage and microglial transcriptional networks

Table S9. Enrichment of AD heritability at variants within the motif-containing macrophage DHS. (XLSX 9 kb

Supplementary information files for Temporal effects of fine sediment deposition on benthic macroinvertebrate community structure, function and biodiversity likely reflects landscape setting

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