422 research outputs found
Double Time Window Targeting Technique: Real time DMRG dynamics in the PPP model
We present a generalized adaptive time-dependent density matrix
renormalization group (DMRG) scheme, called the {\it double time window
targeting} (DTWT) technique, which gives accurate results with nominal
computational resources, within reasonable computational time. This procedure
originates from the amalgamation of the features of pace keeping DMRG
algorithm, first proposed by Luo {\it et. al}, [Phys.Rev. Lett. {\bf 91},
049701 (2003)], and the time-step targeting (TST) algorithm by Feiguin and
White [Phys. Rev. B {\bf 72}, 020404 (2005)]. Using the DTWT technique, we
study the phenomena of spin-charge separation in conjugated polymers (materials
for molecular electronics and spintronics), which have long-range
electron-electron interactions and belong to the class of strongly correlated
low-dimensional many-body systems. The issue of real time dynamics within the
Pariser-Parr-Pople (PPP) model which includes long-range electron correlations
has not been addressed in the literature so far. The present study on PPP
chains has revealed that, (i) long-range electron correlations enable both the
charge and spin degree of freedom of the electron, to propagate faster in the
PPP model compared to Hubbard model, (ii) for standard parameters of the PPP
model as applied to conjugated polymers, the charge velocity is almost twice
that of the spin velocity and, (iii) the simplistic interpretation of
long-range correlations by merely renormalizing the {\it U} value of the
Hubbard model fails to explain the dynamics of doped holes/electrons in the PPP
model.Comment: Final (published) version; 39 pages, 13 figures, 1 table; 2 new
references adde
Dynamic ductile to brittle transition in a one-dimensional model of viscoplasticity
We study two closely related, nonlinear models of a viscoplastic solid. These
models capture essential features of plasticity over a wide range of strain
rates and applied stresses. They exhibit inelastic strain relaxation and steady
flow above a well defined yield stress. In this paper, we describe a first step
in exploring the implications of these models for theories of fracture and
related phenomena. We consider a one dimensional problem of decohesion from a
substrate of a membrane that obeys the viscoplastic constitutive equations that
we have constructed. We find that, quite generally, when the yield stress
becomes smaller than some threshold value, the energy required for steady
decohesion becomes a non-monotonic function of the decohesion speed. As a
consequence, steady state decohesion at certain speeds becomes unstable. We
believe that these results are relevant to understanding the ductile to brittle
transition as well as fracture stability.Comment: 10 pages, REVTeX, 12 postscript figure
miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity
Using quantitative analyses, we identified microRNAs (miRNAs) that were abundantly expressed in visual cortex and that responded to dark rearing and/or monocular deprivation. The most substantially altered miRNA, miR-132, was rapidly upregulated after eye opening and was delayed by dark rearing. In vivo inhibition of miR-132 in mice prevented ocular dominance plasticity in identified neurons following monocular deprivation and affected the maturation of dendritic spines, demonstrating its critical role in the plasticity of visual cortex circuits.National Eye Institute (Ruth L. Kirschstein Postdoctoral Fellowship 1F32EY020066-01)Simons Foundation (Postdoctoral Fellowship)National Institutes of Health (U.S.) (EY017098)National Institutes of Health (U.S.) (EY007023
Fluorescence studies on new potential antitumoral benzothienopyran-1-ones in solution and in liposomes
Fluorescence properties of four new potential
antitumoral compounds, 3-arylbenzothieno[2,3-c]pyran-1-ones, were studied in solution and in lipid membranes of dipalmitoyl phosphatidylcholine (DPPC), egg yolk phosphatidylcholine (Egg-PC) and dioctadecyldimethylammonium bromide (DODAB). The 3-(4-methoxyphenyl)benzothieno[2,3-c]pyran-1-one (1c) exhibits the higher fluorescence quantum yields in all solvents studied. All compounds present a solvent sensitive emission, with significant red shifts in polar solvents for the methoxylated compounds. The results point to an ICT character of the excited state, more pronounced for compound 1c. Fluorescence (steady-state) anisotropy measurements of the compounds incorporated in liposomes of DPPC, DODAB and Egg-PC indicate that all compounds have two different locations, one due to a deep penetration in the lipid membrane and another corresponding to a more hydrated environment. In general, the methoxylated compounds prefer hydrated environments inside the liposomes. The 3-(4-
fluorophenyl)benzothieno[2,3-c]pyran-1-one (1a) clearly prefers a hydrated environment, with some molecules located at the outer part of the liposome interface. On the contrary, the preferential location of 3-(2-fluorophenyl)benzothieno[2,3-c]pyran-1-one (1b) is in the region of lipid hydrophobic tails. Compounds with a planar geometry (1a and 1c) have higher mobility in the lipid membranes when phase transition occurs.Portugal and FEDER (Fundo Europeu de Desenvolvimento Regional), for financial support through Centro de FÃsica (CFUM) and Centro de QuÃmica (CQ-UM) of University of Minho and through the Project PTDC/QUI/81238/2006. M.S.D. Carvalho and R.C. Calhelha acknowledge FCT for their PhD grants SFRH/BD/47052/2008 and SFRH/BD/29274/2006, respectively.Fundação para a Ciência e a Tecnologia (FCT
Analysis of Area-Specific Expression Patterns of RORbeta, ER81 and Nurr1 mRNAs in Rat Neocortex by Double In Situ Hybridization and Cortical Box Method
BACKGROUND: The mammalian neocortex is subdivided into many areas, each of which exhibits distinctive lamina architecture. To investigate such area differences in detail, we chose three genes for comparative analyses, namely, RORbeta, ER81 and Nurr1, mRNAs of which have been reported to be mainly expressed in layers 4, 5 and 6, respectively. To analyze their qualitative and quantitative coexpression profiles in the rat neocortex, we used double in situ hybridization (ISH) histochemistry and cortical box method which we previously developed to integrate the data of different staining and individuals in a standard three-dimensional space. PRINCIPAL FINDINGS: Our new approach resulted in three main observations. First, the three genes showed unique area distribution patterns that are mostly complementary to one another. The patterns revealed by cortical box method matched well with the cytoarchitectonic areas defined by Nissl staining. Second, at single cell level, RORbeta and ER81 mRNAs were coexpressed in a subpopulation of layer 5 neurons, whereas Nurr1 and ER81 mRNAs were not colocalized. Third, principal component analysis showed that the order of hierarchical processing in the cortex correlates well with the expression profiles of these three genes. Based on this analysis, the dysgranular zone (DZ) in the somatosensory area was considered to exhibit a profile of a higher order area, which is consistent with previous proposal. CONCLUSIONS/SIGNIFICANCE: The tight relationship between the expression of the three layer specific genes and functional areas were revealed, demonstrating the usefulness of cortical box method in the study on the cerebral cortex. In particular, it allowed us to perform statistical evaluation and pattern matching, which would become important in interpreting the ever-increasing data of gene expression in the cortex
- …